Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium941g00003 ATGACAATAGAAGAAGAAGGTGGTGTTGGAGGAGATGGTGTGAGGTCAAGGAATGAAGGAAGGAGGAGTTGTTCATCATCAGCGAGCAGAGATTTGGCCTCAGCAAGGTTTGATGAGGCAGTGAGTAGAGAGAGTGATGTGTTCCACAGAGGTGTAAGGGAAATAGAAGAAGAGGAGGAGCTGAAGTGGGAGGCTTTGAAAAGGCTTCCAACATATGATAGAATGAGGAGAGTCATTTTGAAGCAAGTTTTGGATAATGGAGGAGTGAACTATGAAGAGGTTGACATCACCAAGCTTGGAGTGCAGGAAAAGAAGCATCTCCTTGAAAACATAGTAGGAACTGCTGAAGAGAACAATGAGAGTTTCCTCCATAGGATGAGGGATAGAATTGATAGGGTAAGCATTGAGATTCCCCAGATTGAAGTAAGGTATGAGAACTTATCAGTTGAAGGGGATGCATATGTTGGAAGAAGGGCACTACCAACACTCTTCAATTCTACCATCAATGCAATAGAGGTATTGGTGAATTATCTTGTAAGTCTTCTGTTTGGAGTTTTGGGATTTCTTAAGCTTTTGCCTCAAAACACAAAGGTTGTGAAGATTCTTCAAGAAAAAGTTGTCAATATTCTCAAAGATATTAGTGGAATTGTGAAACCGTCAAGAATGACTCTGCTTTTGGGACCTCCAGGATCAGGAAAAACTACATTTCTGAAGGCACTTGCTGGAAAAATGGACAATGATTTAAGGGTATCAGGAAGAGTCACTTACTGTGGTCATGAATTGTCAGAGTTTGTTCCTGAAAGAACATGTGCATATATCAGTCAGCATGATCTTCACTATGGAGAGATGACAGTGAGAGAGACACTGGACTTTTCTGGACGCTGCCTGGGAGTAGGAACAAGGTATGATATGCTGGAAGAGTTGTCGAGGCGGGAAATAGCAGCCGGCATTAAACCAGATCCTGAGATAGATGCTTTCATGAAAGCCACAGCAATGGAAGGTCAAGAAACAAGTCTTGTTACTGATTACGTTCTAAAGATTCTTGGATTGGAAATATGTGCTGATATTATGGTGGGAGATGAGATGAAAAGGGGCATTTCTGGTGGACAAAAGAAGCGTTTAACTACTGGTGAGATGTTGGCAGGCCCTGCAAAAGCATTCTTCATGGATGAAATTTCAACTGGTTTGGATAGTTCCACAACCTTCCAAATTGTGAGGTTTATGAGGCAGATGGTCCATATAATGGATGTTACCATGATAATCGCTCTTCTGCAGCCTGCACCAGAAACATATGAACTGTTTGATGACATAATATTGCTTTCAGAAGGTGAGATTGTCTATCAAGGTCCCCGTGAGAGTGTTCTGCATTTTTTCGAAAGTGTGGGCTTCAAATGCCCAGAAAGGAAAGGAGTTGCAGACTTCTTACAAGAGGTAACTTCCAAAAAGGACCAAGAACAGTACTGGTTCAGAAGGGACATTCCTTACCATTATGTCACAGTGCCTGAGTTTGTAGCCCATTTCAAGAATTACAGTATCGGTCAGCAACTACATGAAAAGATTAAAGTTCCATATGATCCTAATGAAAGGCATCGTGCTGCATTGGTGAAGGAAAAGTATGGCATCTCCAAATGGGAACTCTTCAAGGCATGCTTTTCAAGAGAGTGGCTTTTGATGAAGCGCAACTATTTCTTATACATATTCAAGACTTTTCAGATTACTATAATGGCTCTGATTGCCATGTCAGTGTTTTTTAGAACAGAAATGAAACATGGTCAACTTGAAGGTGCAGGAAAATACTATGGTGCACTATTTTTCAGCCTCATTAATATAATGTTCAATGGAGTGGCTGAACTTTCAATGACAGTCATCAAACTTCCCATTTTCTATAAGCAGAGAGATTTCCACTTTTTTCCAGCATGGGCTTTTGCATTGCCCATTTGGGTTCTCAGAGTTCCTCTCTCTCTACTGGAATCAGGATTATGGGTCATCCTCACTTATTATACTATTGGCTTTGCTCCTGCAGCTAGTAGGTTTTTTCGTCAGTTATTGGCATTCTTCTGGGTGAATCAAATGGCTCTGTCCCTATTCCGCTTTATTGCTGCAGTTGGAAGGACAAAAGTTATTGCACACACACTTGGTTCCTTCACAATATTAGTTGTTTTTGTCCTAAGTGGATTTACTGTTTCAAGAAAGGATATTGGACCATGGATGATATGGTGCTATTATAGTTCACCTATGATGTATGGTCATAATGCAATAGCCATCAACGAGTTCCTAGACAAAAGATGGAGTGCTAAAAATATTGACCCAAGGATCCCTGAGCCCACAGTTGGGAAGGCTTTTCTTAATGCTAGAGGCATTTTTACAGAAGACTATTGGTACTGGATATCTGTGGCTGCCCTTATAGGATTTTCTTTGCTTTTCAACATTTTTTTCATTCTGGCTCTAACCTATTTGAATCCGTTTGGAAATTCAAAAGCTATTATAATGGAAGATGAAGACCAAAAGAAAAGCACATTTGTTTCATCCTCAGTAGAAAATATGGCAACTGTAACCACAGAGCACAGTTCAGCTTCAGTTGGCAATTCGTTTGAAGGTATTGATATGGAAGTAAGAAAAAGTGCTCATAGCTCAATTCCTAAAGCTCCAGTGAATACAAAATCCAAGAAGGGAATGGTGCTGCCATTCAGGCCTCTGTCACTTGCATTTCAAGATGTGAATTATTACATCGATATGCCACTTGAAATGAAGAAACAAGGAATTGAAGAGAATAAACTCCAACTACTTAGAGACATAAGTGGTGCTTTCAGGCCTGGGATTTTAACAGCATTAGTTGGTGTAAGTGGTGCTGGGAAAACCACCTTGATGGATGTTCTTGCAGGAAGGAAAACAGGTGGTTATATTGAGGGGAGCATCAGCATATCTGGTTATCCCAAAAACCAGGCAACGTTTGCTCGGATCAGTGGTTACTGTGAACAAAATGATATACATTCCCCAAACGTTACAGTCTACGAATCGCTGGTGTTTTCTGCTTGGCTGCGTCTCAGTAACGAGGTTAATAAGGAAACAAGAAAGATGTTCATTGAAGAAATTTTAGAGCTGGTTGAGCTCCACTCATTGAGGCATTTTATAGTAGGCCTTCCTGGAATAAATGGCTTATCAACGGAGCAGAGAAAGAGGCTCACCATTGCTGTAGAATTGGTTGCAAATCCTTCCATTATTTTTATGGATGAACCAACAACCGGTTTAGATGCTAGAGCTGCAGCAGTTGTTATGCGTACTGTCAGAAATACAGTGGATACAGGTCGAACTGTTGTCTGCACAATTCATCAACCAAGCATTGATATATTTGAAAATTTTGATGAGCTGCTTTTGATGAAGATAGGTGGACAAGTGATATATGGTGGTCCCCTTGGTCGGAATTCTCAGAATCTTATTGAGTACTTTGAGGGTATCACAGGAGTTCCTAAGATTAAAGATGGATATAATCCAGCCACATGGATGCTGGAGATCACTGCTTCTGTTTTTGAGTCTCAACTTAATGTGGACTTTGCAGAATTATATGCTAAGTCAGACCTTTATCAAAAGAACCAGGAACTTATTCAGGAAATATGCACACCAGTACCTGGAACAAAGGACCTTTACTTTCCCACTAAATACTCTCAGTCATTTGTTTCTCAATGTAAAGCTTGCTTCTGGAAGCAGAATTGCTCCTATTGGAGGAATCCAGAGTATAATGCCATCCGATTATTCGTCACAATAGTTATTGGTATCATTTTTGGACTTATTTATTGGGACAAAGGAAAAAAGACTGAAAAGGAGCAGGACCTGTTGAATCTCCTTGGAGCTATTTATGCATCAGTATTTTTCCTTGGAGCCTCCAACACTAACAGTGTTCAACCTGTTGTAGCAATAGAAAGAACCGTTCTATACCGTGAAAGAGCCGCAGGAATGTACTCAGAATTGCCTTATGCAATTGGTCAGGTAGCAATCGAAGTAATTTATGTTGGAACTCAGAGTCTAGCCTATTCCATTATTCTCTACTTGATGATTGGGTTTGAACCACGTTTTGAAAATTTTTTGTGGTTCTATTACTTCATATTCATGTGCTTTATGTACTTCACACTGTATGGAATGATGACTGTAGCTCTGACACCAAACTATCAAATTGCTGCAATTGTTATGTCCTTCTTCATCAATTTCTGGAACCTGTTCTCTGGTTTTCTTATCCCAAGAACGCAAATTCCAATATGGTGGAGGTGGTATTATTGGGGATCTCCTGTGGCTTGGACTATATATGGATTGGTGACATCCCAAGTTGGTGACAAAAATAGTCCCATAGAGGTTCCTGGCTTTGGAGTCATGACAGTAAAAGATTACCTTGACAGGAAGTTGGGCTTCCAGCATGACTTCCTTGGAGTTGTTGCATTAACTCATGTTGCTTTTTGCCTCCTCTTCGTTTTAGTATTTGCTTATGGCATCAAGTTCCTTAATTTCCAGAAAAGATAG 4509 0.4028 MTIEEEGGVGGDGVRSRNEGRRSCSSSASRDLASARFDEAVSRESDVFHRGVREIEEEEELKWEALKRLPTYDRMRRVILKQVLDNGGVNYEEVDITKLGVQEKKHLLENIVGTAEENNESFLHRMRDRIDRVSIEIPQIEVRYENLSVEGDAYVGRRALPTLFNSTINAIEVLVNYLVSLLFGVLGFLKLLPQNTKVVKILQEKVVNILKDISGIVKPSRMTLLLGPPGSGKTTFLKALAGKMDNDLRVSGRVTYCGHELSEFVPERTCAYISQHDLHYGEMTVRETLDFSGRCLGVGTRYDMLEELSRREIAAGIKPDPEIDAFMKATAMEGQETSLVTDYVLKILGLEICADIMVGDEMKRGISGGQKKRLTTGEMLAGPAKAFFMDEISTGLDSSTTFQIVRFMRQMVHIMDVTMIIALLQPAPETYELFDDIILLSEGEIVYQGPRESVLHFFESVGFKCPERKGVADFLQEVTSKKDQEQYWFRRDIPYHYVTVPEFVAHFKNYSIGQQLHEKIKVPYDPNERHRAALVKEKYGISKWELFKACFSREWLLMKRNYFLYIFKTFQITIMALIAMSVFFRTEMKHGQLEGAGKYYGALFFSLINIMFNGVAELSMTVIKLPIFYKQRDFHFFPAWAFALPIWVLRVPLSLLESGLWVILTYYTIGFAPAASRFFRQLLAFFWVNQMALSLFRFIAAVGRTKVIAHTLGSFTILVVFVLSGFTVSRKDIGPWMIWCYYSSPMMYGHNAIAINEFLDKRWSAKNIDPRIPEPTVGKAFLNARGIFTEDYWYWISVAALIGFSLLFNIFFILALTYLNPFGNSKAIIMEDEDQKKSTFVSSSVENMATVTTEHSSASVGNSFEGIDMEVRKSAHSSIPKAPVNTKSKKGMVLPFRPLSLAFQDVNYYIDMPLEMKKQGIEENKLQLLRDISGAFRPGILTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKNQATFARISGYCEQNDIHSPNVTVYESLVFSAWLRLSNEVNKETRKMFIEEILELVELHSLRHFIVGLPGINGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFENFDELLLMKIGGQVIYGGPLGRNSQNLIEYFEGITGVPKIKDGYNPATWMLEITASVFESQLNVDFAELYAKSDLYQKNQELIQEICTPVPGTKDLYFPTKYSQSFVSQCKACFWKQNCSYWRNPEYNAIRLFVTIVIGIIFGLIYWDKGKKTEKEQDLLNLLGAIYASVFFLGASNTNSVQPVVAIERTVLYRERAAGMYSELPYAIGQVAIEVIYVGTQSLAYSIILYLMIGFEPRFENFLWFYYFIFMCFMYFTLYGMMTVALTPNYQIAAIVMSFFINFWNLFSGFLIPRTQIPIWWRWYYWGSPVAWTIYGLVTSQVGDKNSPIEVPGFGVMTVKDYLDRKLGFQHDFLGVVALTHVAFCLLFVLVFAYGIKFLNFQKR 1502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium941g00003 1502 SMART AAA_5 938 1130 IPR003593 GO:0016887
Vium941g00003 1502 SMART AAA_5 219 444 IPR003593 GO:0016887
Vium941g00003 1502 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 901 1153 IPR003439 GO:0005524
Vium941g00003 1502 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 915 1137 IPR027417 -
Vium941g00003 1502 FunFam ABC transporter G family member 40 915 1145 - -
Vium941g00003 1502 CDD ABCG_PDR_domain1 209 449 IPR034001 -
Vium941g00003 1502 Pfam ABC-transporter N-terminal 115 165 IPR029481 -
Vium941g00003 1502 Pfam ABC-2 type transporter 425 479 IPR043926 GO:0140359
Vium941g00003 1502 Pfam ABC-2 type transporter 1110 1181 IPR043926 GO:0140359
Vium941g00003 1502 MobiDBLite consensus disorder prediction 1 31 - -
Vium941g00003 1502 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 207 467 IPR027417 -
Vium941g00003 1502 FunFam ABC transporter G family member 34 197 501 - -
Vium941g00003 1502 Pfam ABC-2 type transporter 1227 1438 IPR013525 GO:0016020|GO:0140359
Vium941g00003 1502 Pfam ABC-2 type transporter 546 758 IPR013525 GO:0016020|GO:0140359
Vium941g00003 1502 Pfam ABC transporter 929 1080 IPR003439 GO:0005524
Vium941g00003 1502 Pfam Plant PDR ABC transporter associated 771 829 IPR013581 -
Vium941g00003 1502 Pfam ABC transporter 210 392 IPR003439 GO:0005524
Vium941g00003 1502 CDD ABCG_PDR_domain2 898 1136 IPR034003 -
Vium941g00003 1502 Gene3D - 196 494 IPR027417 -
Vium941g00003 1502 PANTHER PLEIOTROPIC DRUG RESISTANCE PROTEIN 1-LIKE ISOFORM X1 31 1502 - -
Vium941g00003 1502 Gene3D - 914 1148 IPR027417 -
Vium941g00003 1502 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 193 467 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium941g00003 Vium-Chr941 11139 27152 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium941g00003 926 1113 Calmodulin-binding Proteins AT2G36910 27.723 8.11e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium941g00003 K08711 - gmx:100788067 2578.13