Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9416g00002 ATGAGATCTCCTCTCATAGAGGACCCTTTGGTCTGTTCTCCTGATACTCTGCATCCAGGAAATATTTTGTTAGATGCTAGAGATATGGGTTTAAGGAACAGTGCTGGTCCACAAAAGCATCAAGCAGTAATGACAAGTGCTGATCAAGCAGTTTTCTATAGGTGTCGTATTGATGCATATCACGATACTCTCTATGCTTATTCCAACTGTCAATTCTACAGAGAATGTAACATCAATGGCACAGTTGATTTCATCTTTGGCAATTCTACAGTTGTGATCCAAAACTGTAATATTAGGCCAAAGTTACCAATGGCAGCGCGATCTTCCTCAGATGGCAGCGCGGTAGTCGGGGAAACAAATGATGCTCCACTTGAAACTGCAGGTCAGCGTGAAACCAGTCCATCCAAGCAGAACAACTGA 420 0.4286 MRSPLIEDPLVCSPDTLHPGNILLDARDMGLRNSAGPQKHQAVMTSADQAVFYRCRIDAYHDTLYAYSNCQFYRECNINGTVDFIFGNSTVVIQNCNIRPKLPMAARSSSDGSAVVGETNDAPLETAGQRETSPSKQNN 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9416g00002 139 SUPERFAMILY Pectin lyase-like 26 104 IPR011050 -
Vium9416g00002 139 Pfam Pectinesterase 26 108 IPR000070 GO:0030599|GO:0042545
Vium9416g00002 139 ProSitePatterns Pectinesterase signature 2. 78 87 IPR033131 -
Vium9416g00002 139 MobiDBLite consensus disorder prediction 125 139 - -
Vium9416g00002 139 PANTHER PECTINESTERASE 26 105 - -
Vium9416g00002 139 Gene3D - 20 128 IPR012334 -
Vium9416g00002 139 MobiDBLite consensus disorder prediction 104 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9416g00002 Vium-Chr9416 25562 26520 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9416g00002 26 110 Carbohydrate Esterase AT3G10710 59.770 4.35e-31 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9416g00002 - - vum:124848434 288.5