Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9410g00004 ATGATGTTATCAGCTACAATGTCTGCTCTATCGAGGAGTTCGCTGGAGGAGATGCTTGAGTCGCTTCGCAAGAGAGACGAGGAGGAGAGACCGAAGGACTTGCCGCCGGCATTGCCGTCGCGGCCGCAGTCGAGGGCGCGGTTGCCTCCGGCGAGGAGGTCGTTGCCTCATAACTTCAAGGTTGATGGCGATAATGATCAGAAGGGGCACAAAAGGAAGGGTAGTTTTGGGTCCAAGAAGGTCAAGTTGCGTGTGGAATCCCCTTATGCAGTCATATCAGAAGAGAAAGTGAGTGAACAACCATCGTCTCCGGTTCCAACTGCGAATGATTCTTCTACTGATTGTGAAGCTCCTCCTCAGTCTGAGGAGTTGGAGGATGATAACGTTGCTTATTTCATAAAAAAGAAACTTCATGTTTGGTGTAGGCAACCAAGAGGGAAATGGGAGCTGGGAACGATACAGTCAACTTCTGGAGAGGAAGCATCTGTTTATCTCTCAAATGGAAATGTTCTGAAAGTAGCCAGGTCAGATCTCCTACCAGCTAATCCTGACATTTTGGAGGGTATTGAAGATCTTATACAGCTCAGTTACTTAAATGAGCCTTCAGTTCTTCACAATCTTCAGTATAGATATGCTCAGGATATGATTTATAGTAAAGCAGGGCCAATTTTAATTGCACTCAATCCTTTCAAAAATGTCGAAGTTTATGGCAATGATTATGTTCTAGCTTATAGGCAGAAACTTACCGATAGTCCTCATGTTTATGCTTTGACAGATGCAGCTTACAATGAGATGATGACAGGTGAAGTAAATCAGTCTATTATCATAAGTGGTGAAAGTGGAGCTGGGAAAACAGAGACCGCAAAAATTGCTATGCAATACTTAGCTGCTCTTGGTGGTGGCTGTTCAGGAATAGAAAATGAAATCCTTCAGACAAATTTTATTCTAGAGGCTTTTGGGAATGCAAAAACATCTAGGAATGATAACTCTAGCAGATTTGGGAAGTTGATTGAAATTCATTTCAGCACAATGGGGAAAATTTGTGGTGCAAAAGTTCAAACTTTTCTGTTAGAAAAGTCAAGAGTTGTTCAACTTGCCTTGGGTGAGAGGTCATATCACATATTTTATCAACTTTGTGCGGGATCTTCATCCAAACTAAAAGAAAGACTGAATCTTAGGGCGGCTAGCGAATATAAATATCTTAACCAAAGTGACTGCACAACAATTGATGGTGTTGATGATGCTAAAAAGTTTAAAAGGCTGATGAAAGCATTGGATGTTATTCAAATGTGCAAAGAAGATCAAGAGCTAGTTTTTAAGATGCTGGCTGCGATATTATGGTTGGGAAATATAGCATTCCAAGATAGTGATAATGAAAATCACATTGAGGTGGTGAATGATGAAGCTGTAACGAATGCTGCTGTGCTAATGGGGTGCAGTTCTCAGGAGCTAATGACAGTGTTATCTACCCATAAAATCCAAGCTGGCAAGGATACTATTACCAAGAAATTGACCTTGCGGCAGGCAATTGATGCAAGAGATGCAATAGCAAAATTTATCTATGCAAGCTTGTTTGACTGGCTTGTAGAACAAGTTAACAAGTCACTTCAAGTAGGTAAACGGTGTACTGGGAGATCTATAAGTATCCTTGATATTTATGGATTTGAGTCATTCCAGAATAACAGCTTTGAACAATTTTGTATAAACTACGCCAATGAGAGGCTTCAACAACATTTCAATCGGCATCTGTTTAAACTTGAGCAGGAGGACTATGAATTAGACGGTATTGATTGGACTAGAGTAGAGTTTGAGGACAACCAAGTGTGTTTGGATCTCTTTGAAAAGAAGCCTCTTGGGCTATTCTCTCTGTTGGACGAGGAATCTAATTTCCCCAAGGCCAGTGATCTAACACTAGCCAACAAACTTAAGCAGCACCTGCACTCTAATCCTTGCTTTAAAGGGGAAAGAGGCAGGGCTTTTAGTGTCTCTCATTATGCTGGGGAGGTTTTGTATGATACAAGTGGCTTCCTAGAAAAGAATAGAGATCCACTACCATCTGATTCCATTCAACTACTGTCATCATGTAGCTGTGAACTGCTTCAGTTGTTCCCCAAGATGCTTAATCTGCCTCAGAAGCAATCAAATTACTCGCATGGAGGTGCTCTGGACTCAAAAAAGCAGAGTGTTGGCACTAAGTTCAAGGGTCAATTGTTCAAGTTGATGCATCAGCTGGAGAGCACCACACCTCACTTTATTCGCTGTATAAAGCCAAATACTAAGCAACTTCCTGGAATATATGAACAAGATCTTGTACTACAACAGCTCAAGTGTTGTGGAGTTTTGGAGGTTGTTAGGATTTCGAGGGCTGGATATCCTACTCGAATGACACATCAAGATTTTTCCAGAAGGTATGGGTTTCTGCTTGTTGAGGCGAACACATCTCAGGACCCATTGAGCATTTCGGTTGCGGTTTTGCAACAATTTAATATCCCTCCCGAAATGTACCAAGTTGGCTTCACCAAACTTTATCTTCGAACTGGGCAGATTGGGGCACTGGAGGACAGGAGAAAATATCTTTTGCAGGGACTACTTGGTATTCAAAAAAGTTTTCGTGGTTATCAAGCTCGCCGTCGTTACCATGAGCTGAAGAAGGGAGTGACTACTTTACAATCATTTGTTCGGGGAGAAATTGGAAGAAGGGAATATGGTGTTATGGTGAAGTCTTCTATGACTATTTCTTCTGAAAATGTTAAGGAGATGCTGGCAGCCACAACACTACAATCTGTAATTCGTGGATGGCTGGTTCGGAGGAATGCCAGTGACTTCAATAACTCAAAGAAAAGTCGTGAAAATGCAAGATCTAGGCGAAGGTCACGTGTGAAGATGCCCGAAGAAAAGGATGTGCCAAGTGATCGGCTCCCGAATCTACCTGCAGCTTTAGCTGAACTCCAGAGGCGGGTTGTCAAGGCTGAAGCTACCATAGAGCAAAAGGAAGGGGAAAATGCTGAATTGAAGGATCAGCTAAATCAGTTTGAGAGTAGATGGATTCAATACGAGAAAAGGATGAAATCAATGGAGGATATGTGGCAAAAACAAATGGCATCTTTGCAAACGAGCCTTGCTTCTGCTAGAAAGAGCCTTGCTTCTGAGAATGCCAACAATCAACATGCAAGACGTGATGTATCATCACCTTTACCCTATGATTCAGAAGATGCTATTTCCATGGGATCTCGAACACCTAGTGTAAGCACACCTTTGAAGTATTCTGCTAGCATTTCTGAATCTGCACTAGGGAGAGATGGTCATGGTGCTTTGGCTTCAGTGGGCCACCTTGCTAGGGAATTTGATCACCGTAGACAGACCTTTGATTATGATGCCAGAAATCTGGTTGAGCTTAGAGCAGGTCAATCTGCTAACACAAATTCCGTTGAAGAACTTCGGAAACTCAAACATAGGTTTGAGGTGTGGAAGAAAGATTACAAGGTTAGATTAAAAGAAACAAAAGCAAGACTTCAAAAGGTAGGGAATTCAGAAATTGATAAAAGGCGGAGATGGTGGGGGAAACTGAGTTCCAGAGCACTATAG 3585 0.4209 MMLSATMSALSRSSLEEMLESLRKRDEEERPKDLPPALPSRPQSRARLPPARRSLPHNFKVDGDNDQKGHKRKGSFGSKKVKLRVESPYAVISEEKVSEQPSSPVPTANDSSTDCEAPPQSEELEDDNVAYFIKKKLHVWCRQPRGKWELGTIQSTSGEEASVYLSNGNVLKVARSDLLPANPDILEGIEDLIQLSYLNEPSVLHNLQYRYAQDMIYSKAGPILIALNPFKNVEVYGNDYVLAYRQKLTDSPHVYALTDAAYNEMMTGEVNQSIIISGESGAGKTETAKIAMQYLAALGGGCSGIENEILQTNFILEAFGNAKTSRNDNSSRFGKLIEIHFSTMGKICGAKVQTFLLEKSRVVQLALGERSYHIFYQLCAGSSSKLKERLNLRAASEYKYLNQSDCTTIDGVDDAKKFKRLMKALDVIQMCKEDQELVFKMLAAILWLGNIAFQDSDNENHIEVVNDEAVTNAAVLMGCSSQELMTVLSTHKIQAGKDTITKKLTLRQAIDARDAIAKFIYASLFDWLVEQVNKSLQVGKRCTGRSISILDIYGFESFQNNSFEQFCINYANERLQQHFNRHLFKLEQEDYELDGIDWTRVEFEDNQVCLDLFEKKPLGLFSLLDEESNFPKASDLTLANKLKQHLHSNPCFKGERGRAFSVSHYAGEVLYDTSGFLEKNRDPLPSDSIQLLSSCSCELLQLFPKMLNLPQKQSNYSHGGALDSKKQSVGTKFKGQLFKLMHQLESTTPHFIRCIKPNTKQLPGIYEQDLVLQQLKCCGVLEVVRISRAGYPTRMTHQDFSRRYGFLLVEANTSQDPLSISVAVLQQFNIPPEMYQVGFTKLYLRTGQIGALEDRRKYLLQGLLGIQKSFRGYQARRRYHELKKGVTTLQSFVRGEIGRREYGVMVKSSMTISSENVKEMLAATTLQSVIRGWLVRRNASDFNNSKKSRENARSRRRSRVKMPEEKDVPSDRLPNLPAALAELQRRVVKAEATIEQKEGENAELKDQLNQFESRWIQYEKRMKSMEDMWQKQMASLQTSLASARKSLASENANNQHARRDVSSPLPYDSEDAISMGSRTPSVSTPLKYSASISESALGRDGHGALASVGHLAREFDHRRQTFDYDARNLVELRAGQSANTNSVEELRKLKHRFEVWKKDYKVRLKETKARLQKVGNSEIDKRRRWWGKLSSRAL 1194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9410g00004 1194 MobiDBLite consensus disorder prediction 1 79 - -
Vium9410g00004 1194 MobiDBLite consensus disorder prediction 1 15 - -
Vium9410g00004 1194 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 162 907 IPR027417 -
Vium9410g00004 1194 Gene3D - 370 426 - -
Vium9410g00004 1194 Pfam IQ calmodulin-binding motif 922 938 IPR000048 GO:0005515
Vium9410g00004 1194 Pfam IQ calmodulin-binding motif 866 880 IPR000048 GO:0005515
Vium9410g00004 1194 ProSiteProfiles Myosin motor domain profile. 187 857 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vium9410g00004 1194 CDD MYSc_Myo8 201 845 IPR036022 -
Vium9410g00004 1194 MobiDBLite consensus disorder prediction 957 971 - -
Vium9410g00004 1194 MobiDBLite consensus disorder prediction 943 973 - -
Vium9410g00004 1194 MobiDBLite consensus disorder prediction 17 35 - -
Vium9410g00004 1194 SMART MYSc_2a 181 858 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vium9410g00004 1194 SMART iq_5 918 940 IPR000048 GO:0005515
Vium9410g00004 1194 SMART iq_5 881 903 IPR000048 GO:0005515
Vium9410g00004 1194 SMART iq_5 858 880 IPR000048 GO:0005515
Vium9410g00004 1194 FunFam Myosin heavy chain 370 426 - -
Vium9410g00004 1194 MobiDBLite consensus disorder prediction 92 123 - -
Vium9410g00004 1194 PRINTS Myosin heavy chain signature 546 574 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vium9410g00004 1194 PRINTS Myosin heavy chain signature 599 627 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vium9410g00004 1194 PRINTS Myosin heavy chain signature 217 236 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vium9410g00004 1194 PRINTS Myosin heavy chain signature 271 296 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vium9410g00004 1194 PRINTS Myosin heavy chain signature 314 341 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vium9410g00004 1194 Gene3D - 558 747 - -
Vium9410g00004 1194 MobiDBLite consensus disorder prediction 1048 1085 - -
Vium9410g00004 1194 Gene3D Kinesin motor domain 186 790 IPR036961 -
Vium9410g00004 1194 FunFam Unconventional myosin-XIX 558 747 - -
Vium9410g00004 1194 Coils Coil 980 1021 - -
Vium9410g00004 1194 Gene3D - 791 858 - -
Vium9410g00004 1194 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 134 183 IPR004009 GO:0003774|GO:0005524|GO:0016459
Vium9410g00004 1194 PANTHER MYOSIN 180 1183 - -
Vium9410g00004 1194 ProSiteProfiles IQ motif profile. 859 888 IPR000048 GO:0005515
Vium9410g00004 1194 ProSiteProfiles IQ motif profile. 882 911 IPR000048 GO:0005515
Vium9410g00004 1194 Gene3D - 864 910 - -
Vium9410g00004 1194 MobiDBLite consensus disorder prediction 57 72 - -
Vium9410g00004 1194 MobiDBLite consensus disorder prediction 96 118 - -
Vium9410g00004 1194 ProSiteProfiles IQ motif profile. 919 948 IPR000048 GO:0005515
Vium9410g00004 1194 FunFam Myosin IE heavy chain 427 535 - -
Vium9410g00004 1194 Gene3D Myosin VI head, motor domain, U50 subdomain 427 535 - -
Vium9410g00004 1194 Pfam Myosin head (motor domain) 190 845 IPR001609 GO:0003774|GO:0005524|GO:0016459
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9410g00004 Vium-Chr9410 15372 26485 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9410g00004 1 1188 Myosins gene family AT5G54280 62.358 0.0 1544
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9410g00004 K10357 - gmx:100801876 1982.61