Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9410g00002 ATGATGTTATCAGCTACAATGTCTGCTCTATCGAGGAGTTCGCTGGAGGAGATGCTTGAGTCGCTTCGCAAGAGAGACGAGGAGGAGAGACCGAAGGACTTGCCGCCGGCATTGCCGTCGCGGCCGCAGTCGAGGGCGCGGTTGCCTCCGGCGAGGAGGTCGTTGCCTCATAACTTCAAGGTTGATGGCGATAATGATCAGAAGGGGCACAAAAGGAAGGGTAGTTTTGGGTCCAAGAAGGTCAAGTTGCGTGTGGAATCCCCTTATGCAGTCATATCAGAAGAGAAAGTGAGTGAACAACCATCGTCTCCGGTTCCAACTGCGAATGATTCTTCTACTGATTGTGAAGCTCCTCCTCAGTCTGAGGAGTTGGAGGATGATAACGTTGCTTATTTCATAAAAAAGAAACTTCATGTTTGGTGTAGGCAACCAAGAGGGAAATGGGAGCTGGGAACGATACAGTCAACTTCTGGAGAGGAAGCATCTGTTTATCTCTCAAATGGAAATGTTCTGAAAGTAGCCAGGTCAGATCTCCTACCAGCTAATCCTGACATTTTGGAGGGTATTGAAGATCTTATACAGCTCAGTTACTTAAATGAGCCTTCAGTTCTTCACAATCTTCAGTATAGATATGCTCAGGATATGATTTATAGTAAAGCAGGGCCAATTTTAATTGCACTCAATCCTTTCAAAAATGTCGAAGTTTATGGCAATGATTATGTTCTAGCTTATAGGCAGAAACTTACCGATAGTCCTCATGTTTATGCTTTGACAGATGCAGCTTACAATGAGATGATGACAGGTGAAGTAAATCAGTCTATTATCATAAGTGGTGAAAGTGGAGCTGGGAAAACAGAGACCGCAAAAATTGCTATGCAATACTTAGCTGCTCTTGGTGGTGGCTGTTCAGGAATAGAAAATGAAATCCTTCAGACAAATTTTATTCTAGAGGCTTTTGGGAATGCAAAAACATCTAGGAATGATAACTCTAGCAGATTTGGGAAGTTGATTGAAATTCATTTCAGCACAATGGGGAAAATTTGTGGTGCAAAAGTTCAAACTTTTCTGTTAGAAAAGTCAAGAGTTGTTCAACTTGCCTTGGGTGAGAGGTCATATCACATATTTTATCAACTTTGTGCGGGATCTTCATCCAAACTAAAAGAAAGACTGAATCTTAGGGCGGCTAGCGAATATAAATATCTTAACCAAAGTGACTGCACAACAATTGATGGTGTTGATGATGCTAAAAAGTTTAAAAGGCTGATGAAAGCATTGGATGTTATTCAAATGTGCAAAGAAGATCAAGAGCTAGTTTTTAAGATGCTGGCTGCGATATTATGGTTGGGAAATATAGCATTCCAAGATAGTGATAATGAAAATCACATTGAGGTGGTGAATGATGAAGCTGTAACGAATGCTGCTGTGCTAATGGGGTGCAGTTCTCAGGAGCTAATGACAGTGTTATCTACCCATAAAATCCAAGCTGGCAAGGATACTATTACCAAGAAATTGACCTTGCGGCAGGCAATTGATGCAAGAGATGCAATAGCAAAATTTATCTATGCAAGCTTGTTTGACTGGCTTGTAGAACAAGTTAACAAGTCACTTCAAGTAGGTAAACGGTGTACTGGGAGATCTATAAGTATCCTTGATATTTATGGATTTGAGTCATTCCAGAATAACAGCTTTGAACAATTTTGTATAAACTACGCCAATGAGAGGCTTCAACAACATTTCAATCGGCATCTGTTTAAACTTGAGCAGGAGGACTATGAATTAGACGGTATTGATTGGACTAGAGTAGAGTTTGAGGACAACCAAGTGTGTTTGGATCTCTTTGAAAAGGTTTTGTATGATACAAGTGGCTTCCTAGAAAAGAATAGAGATCCACTACCATCTGATTCCATTCAACTACTGTCATCATGTAGCTGTGAACTGCTTCAGTTGTTCCCCAAGATGCTTAATCTGCCTCAGAAGCAATCAAATTACTCGCATGGAGGTGCTCTGGACTCAAAAAAGCAGAGTGTTGGCACTAAGTTCAAGGGTCAATTGTTCAAGTTGATGCATCAGCTGGAGAGCACCACACCTCACTTTATTCGCTGTATAAAGCCAAATACTAAGCAACTTCCTGGAATATATGAACAAGATCTTGTACTACAACAGCTCAAGTGTTGTGGAGTTTTGGAGGTTGTTAGGATTTCGAGGGCTGGATATCCTACTCGAATGACACATCAAGATTTTTCCAGAAGGTATGGGTTTCTGCTTGTTGAGGCGAACACATCTCAGGACCCATTGAGCATTTCGGTTGCGGTTTTGCAACAATTTAATATCCCTCCCGAAATGTACCAAGTTGGCTTCACCAAACTTTATCTTCGAACTGGGCAGATTGGGGCACTGGAGGACAGGAGAAAATATCTTTTGCAGGGACTACTTGGTATTCAAAAAAGTTTTCGTGGTTATCAAGCTCGCCGTCGTTACCATGAGCTGAAGAAGGGAGTGACTACTTTACAATCATTTGTTCGGGGAGAAATTGGAAGAAGGGAATATGGTGTTATGGTGAAGTCTTCTATGACTATTTCTTCTGAAAATGTTAAGGAGATGCTGGCAGCCACAACACTACAATCTGTAATTCGTGGATGGCTGGTTCGGAGGAATGCCAGTGACTTCAATAACTCAAAGAAAAGTCGTGAAAATGCAAGATCTAGGCGAAGGTCACGTGTGAAGATGCCCGAAGAAAAGCAGGATGTGCCAAGTGATCGGCTCCCGAATCTACCTGCAGCTTTAGCTGAACTCCAGAGGCGGGTTGTCAAGGCTGAAGCTACCATAGAGCAAAAGGAAGGGGAAAATGCTGAATTGAAGGATCAGCTAAATCAGTTTGAGAGTAGATGGATTCAATACGAGAAAAGGATGAAATCAATGGAGGATATGTGGCAAAAACAAATGGCATCTTTGCAAACGAGCCTTGCTTCTGCTAGAAAGAGCCTTGCTTCTGAGAATGCCAACAATCAACATGCAAGACGTGATGTATCATCACCTTTACCCTATGATTCAGAAGATGCTATTTCCATGGGATCTCGAACACCTAGTGTAAGCACACCTTTGAAGTATTCTGCTAGCATTTCTGAATCTGCACTAGGGAGAGATGGTCATGGTGCTTTGGCTTCAGTGGGCCACCTTGCTAGGGAATTTGATCACCGTAGACAGACCTTTGATTATGATGCCAGAAATCTGGTTGAGCTTAGAGCAGGTCAATCTGCTAACACAAATTCCGTTGAAGAACTTCGGAAACTCAAACATAGGTTTGAGGTGTGGAAGAAAGATTACAAGGTTAGATTAAAAGAAACAAAAGCAAGACTTCAAAAGGTAGGGAATTCAGAAATTGATAAAAGGCGGAGATGGTGGGGGAAACTGAGTTCCAGAGCACTATAG 3429 0.4188 MMLSATMSALSRSSLEEMLESLRKRDEEERPKDLPPALPSRPQSRARLPPARRSLPHNFKVDGDNDQKGHKRKGSFGSKKVKLRVESPYAVISEEKVSEQPSSPVPTANDSSTDCEAPPQSEELEDDNVAYFIKKKLHVWCRQPRGKWELGTIQSTSGEEASVYLSNGNVLKVARSDLLPANPDILEGIEDLIQLSYLNEPSVLHNLQYRYAQDMIYSKAGPILIALNPFKNVEVYGNDYVLAYRQKLTDSPHVYALTDAAYNEMMTGEVNQSIIISGESGAGKTETAKIAMQYLAALGGGCSGIENEILQTNFILEAFGNAKTSRNDNSSRFGKLIEIHFSTMGKICGAKVQTFLLEKSRVVQLALGERSYHIFYQLCAGSSSKLKERLNLRAASEYKYLNQSDCTTIDGVDDAKKFKRLMKALDVIQMCKEDQELVFKMLAAILWLGNIAFQDSDNENHIEVVNDEAVTNAAVLMGCSSQELMTVLSTHKIQAGKDTITKKLTLRQAIDARDAIAKFIYASLFDWLVEQVNKSLQVGKRCTGRSISILDIYGFESFQNNSFEQFCINYANERLQQHFNRHLFKLEQEDYELDGIDWTRVEFEDNQVCLDLFEKVLYDTSGFLEKNRDPLPSDSIQLLSSCSCELLQLFPKMLNLPQKQSNYSHGGALDSKKQSVGTKFKGQLFKLMHQLESTTPHFIRCIKPNTKQLPGIYEQDLVLQQLKCCGVLEVVRISRAGYPTRMTHQDFSRRYGFLLVEANTSQDPLSISVAVLQQFNIPPEMYQVGFTKLYLRTGQIGALEDRRKYLLQGLLGIQKSFRGYQARRRYHELKKGVTTLQSFVRGEIGRREYGVMVKSSMTISSENVKEMLAATTLQSVIRGWLVRRNASDFNNSKKSRENARSRRRSRVKMPEEKQDVPSDRLPNLPAALAELQRRVVKAEATIEQKEGENAELKDQLNQFESRWIQYEKRMKSMEDMWQKQMASLQTSLASARKSLASENANNQHARRDVSSPLPYDSEDAISMGSRTPSVSTPLKYSASISESALGRDGHGALASVGHLAREFDHRRQTFDYDARNLVELRAGQSANTNSVEELRKLKHRFEVWKKDYKVRLKETKARLQKVGNSEIDKRRRWWGKLSSRAL 1142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9410g00002 1142 ProSiteProfiles IQ motif profile. 866 895 IPR000048 GO:0005515
Vium9410g00002 1142 SMART MYSc_2a 181 805 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vium9410g00002 1142 Coils Coil 928 969 - -
Vium9410g00002 1142 MobiDBLite consensus disorder prediction 1 79 - -
Vium9410g00002 1142 MobiDBLite consensus disorder prediction 1 15 - -
Vium9410g00002 1142 FunFam Myosin IE heavy chain 427 535 - -
Vium9410g00002 1142 Pfam IQ calmodulin-binding motif 813 827 IPR000048 GO:0005515
Vium9410g00002 1142 Pfam IQ calmodulin-binding motif 869 885 IPR000048 GO:0005515
Vium9410g00002 1142 MobiDBLite consensus disorder prediction 17 35 - -
Vium9410g00002 1142 Pfam Myosin head (motor domain) 190 615 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vium9410g00002 1142 PRINTS Myosin heavy chain signature 599 627 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vium9410g00002 1142 PRINTS Myosin heavy chain signature 217 236 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vium9410g00002 1142 PRINTS Myosin heavy chain signature 546 574 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vium9410g00002 1142 PRINTS Myosin heavy chain signature 271 296 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vium9410g00002 1142 PRINTS Myosin heavy chain signature 314 341 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vium9410g00002 1142 ProSiteProfiles IQ motif profile. 806 835 IPR000048 GO:0005515
Vium9410g00002 1142 SMART iq_5 828 850 IPR000048 GO:0005515
Vium9410g00002 1142 SMART iq_5 865 887 IPR000048 GO:0005515
Vium9410g00002 1142 SMART iq_5 805 827 IPR000048 GO:0005515
Vium9410g00002 1142 MobiDBLite consensus disorder prediction 92 123 - -
Vium9410g00002 1142 MobiDBLite consensus disorder prediction 996 1033 - -
Vium9410g00002 1142 FunFam Myosin heavy chain 370 426 - -
Vium9410g00002 1142 MobiDBLite consensus disorder prediction 890 921 - -
Vium9410g00002 1142 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 134 183 IPR004009 GO:0003774|GO:0005524|GO:0016459
Vium9410g00002 1142 Gene3D Kinesin motor domain 695 737 IPR036961 -
Vium9410g00002 1142 Gene3D - 558 615 - -
Vium9410g00002 1142 ProSiteProfiles IQ motif profile. 829 858 IPR000048 GO:0005515
Vium9410g00002 1142 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 162 854 IPR027417 -
Vium9410g00002 1142 Gene3D Kinesin motor domain 186 557 IPR036961 -
Vium9410g00002 1142 Gene3D - 811 857 - -
Vium9410g00002 1142 MobiDBLite consensus disorder prediction 57 72 - -
Vium9410g00002 1142 Gene3D - 616 694 - -
Vium9410g00002 1142 Gene3D - 738 805 - -
Vium9410g00002 1142 MobiDBLite consensus disorder prediction 904 918 - -
Vium9410g00002 1142 ProSiteProfiles Myosin motor domain profile. 187 804 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vium9410g00002 1142 Gene3D Myosin VI head, motor domain, U50 subdomain 427 535 - -
Vium9410g00002 1142 MobiDBLite consensus disorder prediction 96 118 - -
Vium9410g00002 1142 PANTHER MYOSIN 180 615 - -
Vium9410g00002 1142 Gene3D - 370 426 - -
Vium9410g00002 1142 CDD MYSc_Myo8 201 792 IPR036022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9410g00002 Vium-Chr9410 15372 26485 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9410g00002 1 1136 Myosins gene family AT5G54280 58.618 0.0 1419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9410g00002 K10357 - gmx:100801876 1852.03