Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9410g00001 ATGGCAGCAACATTGATGGCAGCAACAAGTGGTTCTGGCACTGTTCTTAAACCAAGTCCTTTCCTAGGACAAGGCAAGGCTGGAAATGGCAACCCTCTTAGGGATGTTGTCTCAATGGGAAGTGGGAAATACAGCATGAGCAATGAGCTGTGGTATGGACCAGACAGAGTGAAATACTTGGGACCCTTTTCAGCTCAAACACCTTCATACTTGAAGGGAGAATTTCCAGGTGATTATGGATGGGACACTGCTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAGGTGATCCATGGGCGTTGGGCCATGCTCGGAGCCCTGGGCTGCATCACCCCAGAGGTGCTAGAGAAGTGGTTGAGAGTGGACTTCAAGGAGCCAGTGTGGTTCAAAGCCGGGGCCCAGATATTCTCAGAAGGTGGGCTTGACTATTTGGGCAACCCAAACCTTGTCCATGCCCAAAGCATCTTGGCAGTGCTGGGCTTCCAAGTTGTTCTGATGGGCCTTGTTGAAGGGTTCCGCATCAATGGGCTCGATGGAGTAGGAGAGGGCAACAACCTCTACCCAGGAGGCCAGTACTTTGACCCACTGGGCCTTGCTGATGACCCAACCACTTTTGCTGAGCTCAAAGTGAAGGAGATCAAGAATGGAAGGCTGGCCATGTTCTCCATGTTTGGGTTCTTTGTTCAAGCCATTGTAACTGGTAAAGGCCCATTAGAGAACCTTTTGGACCATCTTGACAACCCTGTGGCTAACAATGCTTGGGTCTATGCTACCAAGTTTGCCCCTGGATCTTAA 810 0.5062 MAATLMAATSGSGTVLKPSPFLGQGKAGNGNPLRDVVSMGSGKYSMSNELWYGPDRVKYLGPFSAQTPSYLKGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGVGEGNNLYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKFAPGS 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9410g00001 269 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 33 268 IPR001344 GO:0009765|GO:0016020
Vium9410g00001 269 FunFam Chlorophyll a-b binding protein, chloroplastic 58 262 - -
Vium9410g00001 269 Gene3D Chlorophyll a/b binding protein domain 58 262 - -
Vium9410g00001 269 SUPERFAMILY Chlorophyll a-b binding protein 50 266 - -
Vium9410g00001 269 Pfam Chlorophyll A-B binding protein 68 235 IPR022796 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9410g00001 Vium-Chr9410 6697 7942 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9410g00001 1 268 Chloroplast and Mitochondria Gene Families AT2G05070 68.382 3.39e-121 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9410g00001 K08914 - gmx:100779387 520.776