Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium940g00062 ATGGATGTGCCACAAACTCCAACCCCTTCTCCACATTTGTATCCACAAGAACTTCAACTTAAGCTTTACCAAGCCTTCATCTTTTCCATTCCCATACTCTTTTCCATCATTCTGGTTCTCTTGTTTTACTTGTTCTACCTCAAAAGGAGAGCTTCCTCTCTTTCATCACCACCTCTCCACATACTTACCAACACTGCCAATCCTCAAACAACATATCCTTACCCTTCACAACCTTGCCGATTAGATCTGACAGTGCAATTTCTTGACAAACTTCCAAGAATTTTATTTGATGAGGATTGTGGAACAAGAGATTCAGTATGTTGTGTTTGCCTTGGAGAATTTGAGCTGAAGGAAGAACTGCTACAAATTCCTTATTGCAAGCATGTGTTTCACATAAGCTGCATATGCAACTGGTTGCAATCAAACTCCACGTGTCCGCTTTGTAGATGTTGCATCACACCCTCCACCAAGTTCCTTAATACACCCTCACCTATTGTATCAGACTCACCACAGCAGGGTGGAATTTCAGGCTCTTCATCACACATCATGTCTATTCCTCAGCAACAAGAAGATCAAGTTGGTAATTCCACAAACACTACCATTTTCCAAGGAAATGGTGTATTACTTAGATGA 633 0.4107 MDVPQTPTPSPHLYPQELQLKLYQAFIFSIPILFSIILVLLFYLFYLKRRASSLSSPPLHILTNTANPQTTYPYPSQPCRLDLTVQFLDKLPRILFDEDCGTRDSVCCVCLGEFELKEELLQIPYCKHVFHISCICNWLQSNSTCPLCRCCITPSTKFLNTPSPIVSDSPQQGGISGSSSHIMSIPQQQEDQVGNSTNTTIFQGNGVLLR 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium940g00062 210 MobiDBLite consensus disorder prediction 162 181 - -
Vium940g00062 210 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 155 IPR013083 -
Vium940g00062 210 FunFam Putative E3 ubiquitin-protein ligase RHA4A isoform A 76 154 - -
Vium940g00062 210 SMART ring_2 107 148 IPR001841 -
Vium940g00062 210 CDD RING-H2_EL5-like 107 149 - -
Vium940g00062 210 SUPERFAMILY RING/U-box 85 160 - -
Vium940g00062 210 PANTHER RING-H2 FINGER PROTEIN ATL16 8 192 IPR044600 GO:0016567|GO:0016740
Vium940g00062 210 MobiDBLite consensus disorder prediction 186 210 - -
Vium940g00062 210 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
Vium940g00062 210 Pfam Ring finger domain 107 149 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium940g00062 Vium-Chr940 334888 336875 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium940g00062 3 179 C3H Transcription Factor Family AT4G10150 35.000 1.72e-30 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium940g00062 K19039 - gmx:100806499 324.709