Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium940g00057 ATGGACGATACTGACACAAAACAGCGAATCGAGGAAACAGTTCGCAGGATTTTGCAAGAGTCGAACATGGACGAGGTTACGGAGTCTAAGATTCGAAAGGAGGCCTCCGAGGAGCTCGGTCTCAACCTGTCTCAGCCCCAATTCAAAGGCTTCGTGAAGCAGGTCGTGGGGGCTTTTCTGCAAGAAAAGGTGCAAGAAATAGAAGAACAGCAGCAACAACAAGAAGAAAATGATGAGGGAGAAGTTGAAGAAGAACAAGGAGAATCCAAGGGCAAGGAGTACGATAATGAAGGCAATCTCATCATCTGCAAGCTTTCAGCGAAGAGAAGGGTGACCGTTCAGGATTTCAGAGGGCAAACGTTGATCTCCATTCGCGAGTACTATAATAAAGATGGCCGGGAACTTCCTTCTAACAAAGGAATAAGTTTGACTGAAGAGCAGTGGTCTGTCTTTAAAAACAATCTGCCTGCCATAGAAAAAGCCATTAAGAAAATGGAATCTCGTTGA 507 0.4517 MDDTDTKQRIEETVRRILQESNMDEVTESKIRKEASEELGLNLSQPQFKGFVKQVVGAFLQEKVQEIEEQQQQQEENDEGEVEEEQGESKGKEYDNEGNLIICKLSAKRRVTVQDFRGQTLISIREYYNKDGRELPSNKGISLTEEQWSVFKNNLPAIEKAIKKMESR 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium940g00057 168 SUPERFAMILY DEK C-terminal domain 3 60 - -
Vium940g00057 168 Coils Coil 57 88 - -
Vium940g00057 168 PIRSF RNA_polymII_KELP 1 168 IPR017415 -
Vium940g00057 168 SUPERFAMILY ssDNA-binding transcriptional regulator domain 102 164 IPR009044 GO:0003677|GO:0006355
Vium940g00057 168 PANTHER RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR 5 167 IPR045125 GO:0003713|GO:0060261
Vium940g00057 168 Pfam Transcriptional Coactivator p15 (PC4) 103 153 IPR003173 GO:0003677|GO:0006355
Vium940g00057 168 Pfam DEK C terminal domain 6 60 IPR014876 -
Vium940g00057 168 FunFam RNA polymerase II transcriptional coactivator KELP 92 168 - -
Vium940g00057 168 Gene3D Transcriptional Coactivator Pc4; Chain A 91 168 IPR009044 GO:0003677|GO:0006355
Vium940g00057 168 MobiDBLite consensus disorder prediction 67 94 - -
Vium940g00057 168 ProSiteProfiles DEK C-terminal (DEK-C) domain profile. 4 61 IPR014876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium940g00057 Vium-Chr940 305180 307617 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Coactivator p15 Vium940g00057 DEK_C 8e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium940g00057 K25815 - gmx:100305633 223.402