Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium940g00051 ATGCTGCTTTTTCTTCATTGCTTTAGTATAACTCTTCAGGTATATGATACCGTTGGAAACAACAAAGTTGAGGATGATTCACTCCTTAGAGATGATGATGATTGGTCCATTGAAGGGAAGAATAACACACTGCAATTTCCCTCATACTACATCGATGAAAATGCAGTTATTTGCTTGGATGGCGATGACTGCAAGGTTCGTAATGGGTTGGCTACTGTTGAAGGAGATTCTGATCTCGATACATCAATAGCATGTGATTCATGTGACATATGGTATCATGCATTCTGTGTGGGATTTGATACCGAAAGTACTTCAGAGAGTACATGGTTATGCCCCAGATGTGTAGCAGATGATGTTTCTAAGGGAGCAACTAATTCAAGGGAGAGGACAACCATGGAATGTAATGCAGACAATAGTAACAGTGATTGCCATGGTGAGGATTCCTTTTCAGGAAAAGTGTCTGTCTCTGTTGCTGATACAGGAGAAACGGCTGTTGTTGTCTCGATGGTTGACAGAGCAAAATGGGTTCCAGCAACAAGTGAGAAAAGCCTATTGCCTTTTGAAGTTGATGCGGATCCAATGACTGAATCATGTATTTTAATGTCTGACATAAATGATCAGCAAAGTGATGAACTGAGGACAAATTCATTACCAATCATGGAAGAAGAACTGGAATTATCTTTATCAAACAATAGTGATTTAAAGAAAAGTGCCAGTGGAGCAATGATTGAACCCAATGGCTTTGATGGAACCGAGTTACTTGACGAATCCCTTACCAAAACTAGTCCATCTAGAATTAAATCTGATATGGGTCTTGATCTTGGTTTGTCAGTGGGCACTTATTTACCTGTTGATGATGCAGACAAGAGTGAACCGAAAGATCAAGCAACAGTTGTCCCATGCTTGACTTCAGAAAAATGTTTTTTGACAGGAGATGAAATTGAAGTCAATGCTTGTAAGGTCAATGCCAGAGTGGCTGGTGGAAAGAGAAAGCATGCTGATTTCAGTAATGGGCAAGTTTATATAAAGGCTGAGGATGGAGATGCCAAACCTGAACTTCCTGATGAAGTTGTGGCAAAGAAAAGTAAAGCTACTGACAGCCAAATGAGTAACACTAATGACACAGCCAATGATCATCTTTTAGAAAATGCTCCGAAGCACCCTGCTTTAAAAGATTCTCCAACAAAGGCAACAGTTACACCAGATATAATGAATATAGTTAAAGGGACAGTCCGAAGGCTTTCCAAGGGACATACTAGTACTAATGCTTGTGACCAGTCATCTGAAAATAAAGGAAATATGGCTGGGTTGAGGGTTAAAAAGATCATGAAGAGAAATTCCGAGGATAGAGAATCATCCTTGTTAGTTCAAAATCTAAGGAAAGAAATTAGAGAAGCTGTCCGTAACAAATCCTCTATAAACTTCGAGGATAACCATTTTGATCCCAAGCTTCTTGAAGCATTTAGGACTGCTATAACAGGGCCTAAAACTGAACTTGTAAACAAGTTATCCCCTGCAGCTATAAAGGCAAAAAAGTCAATGTTGCAGAAAGGCAAAGTCCGTGAAAATTTAACAAAGAAAATATTTGGTGCTTCCAATGGAAGAAGAAAGCGTGCATGGGATAGGGACTGTGAAATTGAGTTCTGGAAATATCGTTGCATGAGAGCTACGAAGCCTGAAAAGATTGAAACTTTAAAATCAGTTCTTGATTTACTAAGAAAAGGTTCAGATGGTACAGAATCAAAGCAAGTTTCTGAATGTCAAACCAAGGATCCTATACTTTCTAGGTTGTATTTAGCAGATACATCTGTTTTCCCCCGGAAAGAGGATGTAAAACCTCTCTCTGTGCTTAAAACTGTGGCTAACTCTGAGCAAACCAAACAAAACAACCCATCAGAGAAAGTACCAAATCTATCCATTGATAACAATACTATTAAAGCAACAGACGTAAACAATCTCTTATCAAAGATCAGTTTTGTTTCAAATGAAAAAAACGTAGACAAAAAGATTGTACATGGACCAGAAAGGACGCCAGTCTCATCAGTTGGTTCCAAAACTGGCACCAAGGAGTTAGGCCAAAAATCTGGTTGCATGAAGAATGATAAAAGAAAATGGGCCTTGGAGGTCCTTGCGAGGAAAACAGCCACAACCAGCGGAGGAAACACAGCAAATGGAAATCAGGAAGACAACTCAGTTTTTAAAGGAAATTATCCTTTACTTGCCCAACTGCCAAGTGATATGAGACCAGTATTGGCACCTTCTCGACACAATAAAATTCCTATATCAGTTAGGCAGACACAGCTTTACCGCCTGACAGAGCGCTTATTGAGGAACACAAATCTGACAGTGATTCGCAGAACTGGCATTACAGAATTAGCTGTTGCAGATGCAATTAATATTGAAAAAGAGGTTGCTGACAGATCAAATAGCAAGCTTGTGTATTTGAACCTTTGTTCGCAGGAGCTCTTGCATCGCACAAATAACACAAAATCTGATGTAGCCACAGATACAACTCCAGCAGCCTCATCAGCAATGCTTAATGATCGACAATCGGAACCAAATATGGAAGATCTTTCAGCTGACCCTGCAGTTGAAACGGCCTTGAAAAATGCTGGTCTGCTGTCTGACTCCCCACCTAGCAGTCCGCATGAGAACAGAGAAACATGTAATGGTGACATGTTGGGGTCCGATAATATACTTGAACTGGATTCGAATCCTGATCTGGATATTTATGGTGATTTTGAGTATGATTTGGAAGATGAGGATTATATTGGTGCTAGTGTTACACAGGTTTCAAAACCAAAACAAGAGCAAAATGAGTCAAAAGTGAAACTTGTTTTCTCCACCATGAACTTGAAAAAGTCAGATATCGCTTTGGATTGTGCTGACGGTGAGGGGCCTGAAAGAAATGAAGTGCCAGGAGAGGCATCCTGCTCGCCAAATTGTCACAATGATGCAGTTCATATGGATAGGTCTTCTCTTTCTTCAGAGCTCCTACCCTTCGAGAGCGCTGTTGAGCCACTTGACAAAGAATTTGAAGAATTATTATACGGCCCTGACAAAGAACCACTAATAAAAAAATTTCCAGCTGGTGAATCAAGATCATTACATGGAGATGGCAAGACAGAAACTCTAAGCGTGGCCAATGACTACCATAATGATGAAGAACTTGCTTTGAATAATGCAATAAAAGCTTCAGAACAGGGGAAGGAGAATCTCACGGAAAAAAATTCTGATACTACCATCACCGACCAGTCTTCCAATATATCTGAAGCCGGTGAAAGTTTCCAACGGAAGGAAGGGAAATCTGATGTCATTGCTAAGCAGACTGACTCGGTAAATCATACAACTAAAAAGGTAGAAGCTTACATCAAGGAGCACATCAGACCACTGTGCAAGAGTGGTGTAATCACGGCTGACCAATACAGGTGGGCTGTTGCAAAAACAACTGAGAAGGTTATGAAGTATCATTGCAAAGCAAAGAATGCGAGTTTTCTCATAAAGGAAGGTGAGAAAGTAAAGAAACTTGCAGAGCAGTATGCTGAAGCAGCCCAACAGACCAAAAAAAATTGA 3573 0.4016 MLLFLHCFSITLQVYDTVGNNKVEDDSLLRDDDDWSIEGKNNTLQFPSYYIDENAVICLDGDDCKVRNGLATVEGDSDLDTSIACDSCDIWYHAFCVGFDTESTSESTWLCPRCVADDVSKGATNSRERTTMECNADNSNSDCHGEDSFSGKVSVSVADTGETAVVVSMVDRAKWVPATSEKSLLPFEVDADPMTESCILMSDINDQQSDELRTNSLPIMEEELELSLSNNSDLKKSASGAMIEPNGFDGTELLDESLTKTSPSRIKSDMGLDLGLSVGTYLPVDDADKSEPKDQATVVPCLTSEKCFLTGDEIEVNACKVNARVAGGKRKHADFSNGQVYIKAEDGDAKPELPDEVVAKKSKATDSQMSNTNDTANDHLLENAPKHPALKDSPTKATVTPDIMNIVKGTVRRLSKGHTSTNACDQSSENKGNMAGLRVKKIMKRNSEDRESSLLVQNLRKEIREAVRNKSSINFEDNHFDPKLLEAFRTAITGPKTELVNKLSPAAIKAKKSMLQKGKVRENLTKKIFGASNGRRKRAWDRDCEIEFWKYRCMRATKPEKIETLKSVLDLLRKGSDGTESKQVSECQTKDPILSRLYLADTSVFPRKEDVKPLSVLKTVANSEQTKQNNPSEKVPNLSIDNNTIKATDVNNLLSKISFVSNEKNVDKKIVHGPERTPVSSVGSKTGTKELGQKSGCMKNDKRKWALEVLARKTATTSGGNTANGNQEDNSVFKGNYPLLAQLPSDMRPVLAPSRHNKIPISVRQTQLYRLTERLLRNTNLTVIRRTGITELAVADAINIEKEVADRSNSKLVYLNLCSQELLHRTNNTKSDVATDTTPAASSAMLNDRQSEPNMEDLSADPAVETALKNAGLLSDSPPSSPHENRETCNGDMLGSDNILELDSNPDLDIYGDFEYDLEDEDYIGASVTQVSKPKQEQNESKVKLVFSTMNLKKSDIALDCADGEGPERNEVPGEASCSPNCHNDAVHMDRSSLSSELLPFESAVEPLDKEFEELLYGPDKEPLIKKFPAGESRSLHGDGKTETLSVANDYHNDEELALNNAIKASEQGKENLTEKNSDTTITDQSSNISEAGESFQRKEGKSDVIAKQTDSVNHTTKKVEAYIKEHIRPLCKSGVITADQYRWAVAKTTEKVMKYHCKAKNASFLIKEGEKVKKLAEQYAEAAQQTKKN 1190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium940g00051 1190 MobiDBLite consensus disorder prediction 1075 1094 - -
Vium940g00051 1190 MobiDBLite consensus disorder prediction 363 379 - -
Vium940g00051 1190 MobiDBLite consensus disorder prediction 360 396 - -
Vium940g00051 1190 ProSiteProfiles Zinc finger PHD-type profile. 55 117 IPR019787 -
Vium940g00051 1190 MobiDBLite consensus disorder prediction 673 696 - -
Vium940g00051 1190 MobiDBLite consensus disorder prediction 1066 1103 - -
Vium940g00051 1190 MobiDBLite consensus disorder prediction 679 693 - -
Vium940g00051 1190 SMART PHD_3 63 115 IPR001965 -
Vium940g00051 1190 SUPERFAMILY FYVE/PHD zinc finger 78 117 IPR011011 -
Vium940g00051 1190 MobiDBLite consensus disorder prediction 829 853 - -
Vium940g00051 1190 Pfam PHD-finger 78 115 IPR019787 -
Vium940g00051 1190 Coils Coil 456 476 - -
Vium940g00051 1190 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 120 IPR013083 -
Vium940g00051 1190 PANTHER RING FINGER PROTEIN 41, 151 46 1180 - -
Vium940g00051 1190 MobiDBLite consensus disorder prediction 829 856 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium940g00051 Vium-Chr940 266864 281055 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vium940g00051 PHD 1.6e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium940g00051 - - gmx:100808102 1837