Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium940g00050 ATGGAGGCGGATTTCGTGACCAATGATATGCTCGCACTCACACACGATGCTTTTGATGCCAACGATAATGATGATGTAGCTATTGAAGGGGAAAGATGTGGAATATGTATGGATGTAGTTATTGACAGGGGAGTTCTGGATTGCTGTCAGCACTGGTTCTGCTTTGTATGCATTGACAACTGGGCTACCATCACTAATCTTTGCCCACTTTGCCAGAATGAGTTTCAGTTAATCACTTGTGTTCCAGTATATGATACCGTTGGAAACAACAAAGTTGAGGATGATTCACTCCTTAGAGATGATGATGATTGGTCCATTGAAGGGAAGAATAACACACTGCAATTTCCCTCATACTACATCGATGAAAATGCAGTTATTTGCTTGGATGGCGATGACTGCAAGGTTCGTAATGGGTTGGCTACTGTTGAAGGAGATTCTGATCTCGATACATCAATAGCATGTGATTCATGTGACATATGGTATCATGCATTCTGTGTGGGATTTGATACCGAAAGTACTTCAGAGAGTACATGGTTATGCCCCAGATGTGTAGCAGATGATGTTTCTAAGGGAGCAACTAATTCAAGGGAGAGGACAACCATGGAATGTAATGCAGACAATAGTAACAGTGATTGCCATGGTGAGGATTCCTTTTCAGGAAAAGTGTCTGTCTCTGTTGCTGATACAGGAGAAACGGCTGTTGTTGTCTCGATGGTTGACAGAGCAAAATGGGTTCCAGCAACAAGTGAGAAAAGCCTATTGCCTTTTGAAGTTGATGCGGATCCAATGACTGAATCATGTATTTTAATGTCTGACATAAATGATCAGCAAAGTGATGAACTGAGGACAAATTCATTACCAATCATGGAAGAAGAACTGGAATTATCTTTATCAAACAATAGTGATTTAAAGAAAAGTGCCAGTGGAGCAATGATTGAACCCAATGGCTTTGATGGAACCGAGTTACTTGACGAATCCCTTACCAAAACTAGTCCATCTAGAATTAAATCTGATATGGGTCTTGATCTTGGTTTGTCAGTGGGCACTTATTTACCTGTTGATGATGCAGACAAGAGTGAACCGAAAGATCAAGCAACAGTTGTCCCATGCTTGACTTCAGAAAAATGTTTTTTGACAGGAGATGAAATTGAAGTCAATGCTTGTAAGGTCAATGCCAGAGTGGCTGGTGGAAAGAGAAAGCATGCTGATTTCAGTAATGGGCAAGTTTATATAAAGGCTGAGGATGGAGATGCCAAACCTGAACTTCCTGATGAAGTTGTGGCAAAGAAAAGTAAAGCTACTGACAGCCAAATGAGTAACACTAATGACACAGCCAATGATCATCTTTTAGAAAATGCTCCGAAGCACCCTGCTTTAAAAGATTCTCCAACAAAGGCAACAGTTACACCAGATATAATGAATATAGTTAAAGGGACAGTCCGAAGGCTTTCCAAGGGACATACTAGTACTAATGCTTGTGACCAGTCATCTGAAAATAAAGGAAATATGGCTGGGTTGAGGGTTAAAAAGATCATGAAGAGAAATTCCGAGGATAGAGAATCATCCTTGTTAGTTCAAAATCTAAGGAAAGAAATTAGAGAAGCTGTCCGTAACAAATCCTCTATAAACTTCGAGGATAACCATTTTGATCCCAAGCTTCTTGAAGCATTTAGGACTGCTATAACAGGGCCTAAAACTGAACTTGTAAACAAGTTATCCCCTGCAGCTATAAAGGCAAAAAAGTCAATGTTGCAGAAAGGCAAAGTCCGTGAAAATTTAACAAAGAAAATATTTGGTGCTTCCAATGGAAGAAGAAAGCGTGCATGGGATAGGGACTGTGAAATTGAGTTCTGGAAATATCGTTGCATGAGAGCTACGAAGCCTGAAAAGATTGAAACTTTAAAATCAGTTCTTGATTTACTAAGAAAAGGTTCAGATGGTACAGAATCAAAGCAAGTTTCTGAATGTCAAACCAAGGATCCTATACTTTCTAGGTTGTATTTAGCAGATACATCTGTTTTCCCCCGGAAAGAGGATGTAAAACCTCTCTCTGTGCTTAAAACTGTGGCTAACTCTGAGCAAACCAAACAAAACAACCCATCAGAGAAAGTACCAAATCTATCCATTGATAACAATACTATTAAAGCAACAGACGTAAACAATCTCTTATCAAAGATCAGTTTTGTTTCAAATGAAAAAAACGTAGACAAAAAGATTGTACATGGACCAGAAAGGACGCCAGTCTCATCAGTTGGTTCCAAAACTGGCACCAAGGAGTTAGGCCAAAAATCTGGTTGCATGAAGAATGATAAAAGAAAATGGGCCTTGGAGGTCCTTGCGAGGAAAACAGCCACAACCAGCGGAGGAAACACAGCAAATGGAAATCAGGAAGACAACTCAGTTTTTAAAGGAAATTATCCTTTACTTGCCCAACTGCCAAGTGATATGAGACCAGTATTGGCACCTTCTCGACACAATAAAATTCCTATATCAGTTAGGCAGACACAGCTTTACCGCCTGACAGAGCGCTTATTGAGGAACACAAATCTGACAGTGATTCGCAGAACTGGCATTACAGAATTAGCTGTTGCAGATGCAATTAATATTGAAAAAGAGGTTGCTGACAGATCAAATAGCAAGCTTGTGTATTTGAACCTTTGTTCGCAGGAGCTCTTGCATCGCACAAATAACACAAAATCTGATGTAGCCACAGATACAACTCCAGCAGCCTCATCAGCAATGCTTAATGATCGACAATCGGAACCAAATATGGAAGATCTTTCAGCTGACCCTGCAGTTGAAACGGCCTTGAAAAATGCTGGTCTGCTGTCTGACTCCCCACCTAGCAGTCCGCATGAGAACAGAGAAACATGTAATGGTGACATGTTGGGGTCCGATAATATACTTGAACTGGATTCGAATCCTGATCTGGATATTTATGGTGATTTTGAGTATGATTTGGAAGATGAGGATTATATTGGTGCTAGTGTTACACAGGTTTCAAAACCAAAACAAGAGCAAAATGAGTCAAAAGTGAAACTTGTTTTCTCCACCATGAACTTGAAAAAGTCAGATATCGCTTTGGATTGTGCTGACGGTGAGGGGCCTGAAAGAAATGAAGTGCCAGGAGAGGCATCCTGCTCGCCAAATTGTCACAATGATGCAGTTCATATGGATAGGTCTTCTCTTTCTTCAGAGCTCCTACCCTTCGAGAGCGCTGTTGAGCCACTTGACAAAGAATTTGAAGAATTATTATACGGCCCTGACAAAGAACCACTAATAAAAAAATTTCCAGCTGGTGAATCAAGATCATTACATGGAGATGGCAAGACAGAAACTCTAAGCGTGGCCAATGACTACCATAATGATGAAGAACTTGCTTTGAATAATGCAATAAAAGCTTCAGAACAGGGGAAGGAGAATCTCACGGAAAAAAATTCTGATACTACCATCACCGACCAGTCTTCCAATATATCTGAAGCCGGTGAAAGTTTCCAACGGAAGGAAGGGAAATCTGATGTCATTGCTAAGCAGACTGACTCGGTAAATCATACAACTAAAAAGGTAGAAGCTTACATCAAGGAGCACATCAGACCACTGTGCAAGAGTGGTGTAATCACGGCTGACCAATACAGGTGGGCTGTTGCAAAAACAACTGAGAAGGTTATGAAGTATCATTGCAAAGCAAAGAATGCGAGTTTTCTCATAAAGGAAGGTGAGAAAGTAAAGAAACTTGCAGAGCAGTATGCTGAAGCAGCCCAACAGACCAAAAAAAATTGA 3780 0.4045 MEADFVTNDMLALTHDAFDANDNDDVAIEGERCGICMDVVIDRGVLDCCQHWFCFVCIDNWATITNLCPLCQNEFQLITCVPVYDTVGNNKVEDDSLLRDDDDWSIEGKNNTLQFPSYYIDENAVICLDGDDCKVRNGLATVEGDSDLDTSIACDSCDIWYHAFCVGFDTESTSESTWLCPRCVADDVSKGATNSRERTTMECNADNSNSDCHGEDSFSGKVSVSVADTGETAVVVSMVDRAKWVPATSEKSLLPFEVDADPMTESCILMSDINDQQSDELRTNSLPIMEEELELSLSNNSDLKKSASGAMIEPNGFDGTELLDESLTKTSPSRIKSDMGLDLGLSVGTYLPVDDADKSEPKDQATVVPCLTSEKCFLTGDEIEVNACKVNARVAGGKRKHADFSNGQVYIKAEDGDAKPELPDEVVAKKSKATDSQMSNTNDTANDHLLENAPKHPALKDSPTKATVTPDIMNIVKGTVRRLSKGHTSTNACDQSSENKGNMAGLRVKKIMKRNSEDRESSLLVQNLRKEIREAVRNKSSINFEDNHFDPKLLEAFRTAITGPKTELVNKLSPAAIKAKKSMLQKGKVRENLTKKIFGASNGRRKRAWDRDCEIEFWKYRCMRATKPEKIETLKSVLDLLRKGSDGTESKQVSECQTKDPILSRLYLADTSVFPRKEDVKPLSVLKTVANSEQTKQNNPSEKVPNLSIDNNTIKATDVNNLLSKISFVSNEKNVDKKIVHGPERTPVSSVGSKTGTKELGQKSGCMKNDKRKWALEVLARKTATTSGGNTANGNQEDNSVFKGNYPLLAQLPSDMRPVLAPSRHNKIPISVRQTQLYRLTERLLRNTNLTVIRRTGITELAVADAINIEKEVADRSNSKLVYLNLCSQELLHRTNNTKSDVATDTTPAASSAMLNDRQSEPNMEDLSADPAVETALKNAGLLSDSPPSSPHENRETCNGDMLGSDNILELDSNPDLDIYGDFEYDLEDEDYIGASVTQVSKPKQEQNESKVKLVFSTMNLKKSDIALDCADGEGPERNEVPGEASCSPNCHNDAVHMDRSSLSSELLPFESAVEPLDKEFEELLYGPDKEPLIKKFPAGESRSLHGDGKTETLSVANDYHNDEELALNNAIKASEQGKENLTEKNSDTTITDQSSNISEAGESFQRKEGKSDVIAKQTDSVNHTTKKVEAYIKEHIRPLCKSGVITADQYRWAVAKTTEKVMKYHCKAKNASFLIKEGEKVKKLAEQYAEAAQQTKKN 1259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium940g00050 1259 SMART PHD_3 132 184 IPR001965 -
Vium940g00050 1259 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 96 IPR013083 -
Vium940g00050 1259 ProSitePatterns Zinc finger RING-type signature. 49 58 IPR017907 -
Vium940g00050 1259 SUPERFAMILY FYVE/PHD zinc finger 147 186 IPR011011 -
Vium940g00050 1259 SUPERFAMILY RING/U-box 25 78 - -
Vium940g00050 1259 SMART ring_2 124 183 IPR001841 -
Vium940g00050 1259 SMART ring_2 33 71 IPR001841 -
Vium940g00050 1259 MobiDBLite consensus disorder prediction 898 925 - -
Vium940g00050 1259 MobiDBLite consensus disorder prediction 432 448 - -
Vium940g00050 1259 Coils Coil 525 545 - -
Vium940g00050 1259 MobiDBLite consensus disorder prediction 1144 1163 - -
Vium940g00050 1259 ProSiteProfiles Zinc finger PHD-type profile. 65 186 IPR019787 -
Vium940g00050 1259 MobiDBLite consensus disorder prediction 898 922 - -
Vium940g00050 1259 MobiDBLite consensus disorder prediction 1135 1172 - -
Vium940g00050 1259 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 125 189 IPR013083 -
Vium940g00050 1259 MobiDBLite consensus disorder prediction 429 465 - -
Vium940g00050 1259 MobiDBLite consensus disorder prediction 742 765 - -
Vium940g00050 1259 PANTHER RING FINGER PROTEIN 41, 151 115 1249 - -
Vium940g00050 1259 ProSiteProfiles Zinc finger RING-type profile. 33 72 IPR001841 -
Vium940g00050 1259 MobiDBLite consensus disorder prediction 748 762 - -
Vium940g00050 1259 Pfam Zinc finger, C3HC4 type (RING finger) 33 71 IPR018957 GO:0046872
Vium940g00050 1259 Pfam PHD-finger 147 184 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium940g00050 Vium-Chr940 266137 281055 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium940g00050 33 120 C3H Transcription Factor Family AT3G58030 32.632 1.75e-07 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vium940g00050 PHD 1.7e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium940g00050 - - gmx:100808102 1998.02