Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium940g00049 ATGGAGGCGGATTTCGTGACCAATGATATGCTCGCACTCACACACGATGCTTTTGATGCCAACGATAATGATGATGTAGCTATTGAAGGGGAAAGATGTGGAATATGTATGGATGTAGTTATTGACAGGGGAGTTCTGGATTGCTGTCAGCACTGGTTCTGCTTTGTATGCATTGACAACTGGGCTACCATCACTAATCTTTGCCCACTTTGCCAGAATGAGTTTCAGTTAATCACTTGTGTTCCAGTATATGATACCGTTGGAAACAACAAAGTTGAGGATGATTCACTCCTTAGAGATGATGATGATTGGTCCATTGAAGGGAAGAATAACACACTGCAATTTCCCTCATACTACATCGATGAAAATGCAGTTATTTGCTTGGATGGCGATGACTGCAAGGTTCGTAATGGGTTGGCTACTGTTGAAGGAGATTCTGATCTCGATACATCAATAGCATGTGATTCATGTGACATATGGTATCATGCATTCTGTGTGGGATTTGATACCGAAAGTACTTCAGAGAGTACATGGTTATGCCCCAGATGTGTAGCAGATGATGTTTCTAAGGGAGCAACTAATTCAAGGGAGAGGACAACCATGGAATGTAATGCAGACAATAGTAACAGTGATTGCCATGGTGAGGATTCCTTTTCAGGAAAAGTGTCTGTCTCTGTTGCTGATACAGGAGAAACGGCTGTTGTTGTCTCGATGGTTGACAGAGCAAAATGGGTTCCAGCAACAAGTGAGAAAAGCCTATTGCCTTTTGAAGTTGATGCGGATCCAATGACTGAATCATGTATTTTAATGTCTGACATAAATGATCAGCAAAGTGATGAACTGAGGACAAATTCATTACCAATCATGGAAGAAGAACTGGAATTATCTTTATCAAACAATAGTGATTTAAAGAAAAGTGCCAGTGGAGCAATGATTGAACCCAATGGCTTTGATGGAACCGAGTTACTTGACGAATCCCTTACCAAAACTAGTCCATCTAGAATTAAATCTGATATGGGTCTTGATCTTGGTTTGTCAGTGGGCACTTATTTACCTGACAAGAGTGAACCGAAAGATCAAGCAACAGTTGTCCCATGCTTGACTTCAGAAAAATGTTTTTTGACAGGAGATGAAATTGAAGTCAATGCTTGTAAGGTCAATGCCAGAGTGGCTGGTGGAAAGAGAAAGCATGCTGATTTCAGTAATGGGCAAGTTTATATAAAGGCTGAGGATGGAGATGCCAAACCTGAACTTCCTGATGAAGTTGTGGCAAAGAAAAGTAAAGCTACTGACAGCCAAATGAGTAACACTAATGACACAGCCAATGATCATCTTTTAGAAAATGCTCCGAAGCACCCTGCTTTAAAAGATTCTCCAACAAAGGCAACAGTTACACCAGATATAATGAATATAGTTAAAGGGACAGTCCGAAGGCTTTCCAAGGGACATACTAGTACTAATGCTTGTGACCAGTCATCTGAAAATAAAGGAAATATGGCTGGGTTGAGGGTTAAAAAGATCATGAAGAGAAATTCCGAGGATAGAGAATCATCCTTGTTAGTTCAAAATCTAAGGAAAGAAATTAGAGAAGCTGTCCGTAACAAATCCTCTATAAACTTCGAGGATAACCATTTTGATCCCAAGCTTCTTGAAGCATTTAGGACTGCTATAACAGGGCCTAAAACTGAACTTGTAAACAAGTTATCCCCTGCAGCTATAAAGGCAAAAAAGTCAATGTTGCAGAAAGGCAAAGTCCGTGAAAATTTAACAAAGAAAATATTTGGTGCTTCCAATGGAAGAAGAAAGCGTGCATGGGATAGGGACTGTGAAATTGAGTTCTGGAAATATCGTTGCATGAGAGCTACGAAGCCTGAAAAGATTGAAACTTTAAAATCAGTTCTTGATTTACTAAGAAAAGGTTCAGATGGTACAGAATCAAAGCAAGTTTCTGAATGTCAAACCAAGGATCCTATACTTTCTAGGTTGTATTTAGCAGATACATCTGTTTTCCCCCGGAAAGAGGATGTAAAACCTCTCTCTGTGCTTAAAACTGTGGCTAACTCTGAGCAAACCAAACAAAACAACCCATCAGAGAAAGTACCAAATCTATCCATTGATAACAATACTATTAAAGCAACAGACGTAAACAATCTCTTATCAAAGATCAGTTTTGTTTCAAATGAAAAAAACGTAGACAAAAAGATTGTACATGGACCAGAAAGGACGCCAGTCTCATCAGTTGGTTCCAAAACTGGCACCAAGGAGTTAGGCCAAAAATCTGGTTGCATGAAGAATGATAAAAGAAAATGGGCCTTGGAGGTCCTTGCGAGGAAAACAGCCACAACCAGCGGAGGAAACACAGCAAATGGAAATCAGGAAGACAACTCAGTTTTTAAAGGAAATTATCCTTTACTTGCCCAACTGCCAAGTGATATGAGACCAGTATTGGCACCTTCTCGACACAATAAAATTCCTATATCAGTTAGGCAGACACAGCTTTACCGCCTGACAGAGCGCTTATTGAGGAACACAAATCTGACAGTGATTCGCAGAACTGGCATTACAGAATTAGCTGTTGCAGATGCAATTAATATTGAAAAAGAGGTTGCTGACAGATCAAATAGCAAGCTTGTGTATTTGAACCTTTGTTCGCAGGAGCTCTTGCATCGCACAAATAACACAAAATCTGATGTAGCCACAGATACAACTCCAGCAGCCTCATCAGCAATGCTTAATGATCGACAATCGGAACCAAATATGGAAGATCTTTCAGCTGACCCTGCAGTTGAAACGGCCTTGAAAAATGCTGGTCTGCTGTCTGACTCCCCACCTAGCAGTCCGCATGAGAACAGAGAAACATGTAATGGTGACATGTTGGGGTCCGATAATATACTTGAACTGGATTCGAATCCTGATCTGGATATTTATGGTGATTTTGAGTATGATTTGGAAGATGAGGATTATATTGGTGCTAGTGTTACACAGGTTTCAAAACCAAAACAAGAGCAAAATGAGTCAAAAGTGAAACTTGTTTTCTCCACCATGAACTTGAAAAAGTCAGATATCGCTTTGGATTGTGCTGACGGTGAGGGGCCTGAAAGAAATGAAGTGCCAGGAGAGGCATCCTGCTCGCCAAATTGTCACAATGATGCAGTTCATATGGATAGGTCTTCTCTTTCTTCAGAGCTCCTACCCTTCGAGAGCGCTGTTGAGCCACTTGACAAAGAATTTGAAGAATTATTATACGGCCCTGACAAAGAACCACTAATAAAAAAATTTCCAGCTGGTGAATCAAGATCATTACATGGAGATGGCAAGACAGAAACTCTAAGCGTGGCCAATGACTACCATAATGATGAAGAACTTGCTTTGAATAATGCAATAAAAGCTTCAGAACAGGGGAAGGAGAATCTCACGGAAAAAAATTCTGATACTACCATCACCGACCAGTCTTCCAATATATCTGAAGCCGGTGAAAGTTTCCAACGGAAGGAAGGGAAATCTGATGTCATTGCTAAGCAGACTGACTCGGTAAATCATACAACTAAAAAGGTAGAAGCTTACATCAAGGAGCACATCAGACCACTGTGCAAGAGTGGTGTAATCACGGCTGACCAATACAGGTGGGCTGTTGCAAAAACAACTGAGAAGGTTATGAAGTATCATTGCAAAGCAAAGAATGCGAGTTTTCTCATAAAGGAAGGTGAGAAAGTAAAGAAACTTGCAGAGCAGTATGCTGAAGCAGCCCAACAGACCAAAAAAAATTGA 3768 0.4045 MEADFVTNDMLALTHDAFDANDNDDVAIEGERCGICMDVVIDRGVLDCCQHWFCFVCIDNWATITNLCPLCQNEFQLITCVPVYDTVGNNKVEDDSLLRDDDDWSIEGKNNTLQFPSYYIDENAVICLDGDDCKVRNGLATVEGDSDLDTSIACDSCDIWYHAFCVGFDTESTSESTWLCPRCVADDVSKGATNSRERTTMECNADNSNSDCHGEDSFSGKVSVSVADTGETAVVVSMVDRAKWVPATSEKSLLPFEVDADPMTESCILMSDINDQQSDELRTNSLPIMEEELELSLSNNSDLKKSASGAMIEPNGFDGTELLDESLTKTSPSRIKSDMGLDLGLSVGTYLPDKSEPKDQATVVPCLTSEKCFLTGDEIEVNACKVNARVAGGKRKHADFSNGQVYIKAEDGDAKPELPDEVVAKKSKATDSQMSNTNDTANDHLLENAPKHPALKDSPTKATVTPDIMNIVKGTVRRLSKGHTSTNACDQSSENKGNMAGLRVKKIMKRNSEDRESSLLVQNLRKEIREAVRNKSSINFEDNHFDPKLLEAFRTAITGPKTELVNKLSPAAIKAKKSMLQKGKVRENLTKKIFGASNGRRKRAWDRDCEIEFWKYRCMRATKPEKIETLKSVLDLLRKGSDGTESKQVSECQTKDPILSRLYLADTSVFPRKEDVKPLSVLKTVANSEQTKQNNPSEKVPNLSIDNNTIKATDVNNLLSKISFVSNEKNVDKKIVHGPERTPVSSVGSKTGTKELGQKSGCMKNDKRKWALEVLARKTATTSGGNTANGNQEDNSVFKGNYPLLAQLPSDMRPVLAPSRHNKIPISVRQTQLYRLTERLLRNTNLTVIRRTGITELAVADAINIEKEVADRSNSKLVYLNLCSQELLHRTNNTKSDVATDTTPAASSAMLNDRQSEPNMEDLSADPAVETALKNAGLLSDSPPSSPHENRETCNGDMLGSDNILELDSNPDLDIYGDFEYDLEDEDYIGASVTQVSKPKQEQNESKVKLVFSTMNLKKSDIALDCADGEGPERNEVPGEASCSPNCHNDAVHMDRSSLSSELLPFESAVEPLDKEFEELLYGPDKEPLIKKFPAGESRSLHGDGKTETLSVANDYHNDEELALNNAIKASEQGKENLTEKNSDTTITDQSSNISEAGESFQRKEGKSDVIAKQTDSVNHTTKKVEAYIKEHIRPLCKSGVITADQYRWAVAKTTEKVMKYHCKAKNASFLIKEGEKVKKLAEQYAEAAQQTKKN 1255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium940g00049 1255 SMART PHD_3 132 184 IPR001965 -
Vium940g00049 1255 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 96 IPR013083 -
Vium940g00049 1255 ProSitePatterns Zinc finger RING-type signature. 49 58 IPR017907 -
Vium940g00049 1255 Pfam Zinc finger, C3HC4 type (RING finger) 33 71 IPR018957 GO:0046872
Vium940g00049 1255 SUPERFAMILY RING/U-box 25 78 - -
Vium940g00049 1255 SUPERFAMILY FYVE/PHD zinc finger 147 186 IPR011011 -
Vium940g00049 1255 SMART ring_2 124 183 IPR001841 -
Vium940g00049 1255 SMART ring_2 33 71 IPR001841 -
Vium940g00049 1255 MobiDBLite consensus disorder prediction 894 921 - -
Vium940g00049 1255 MobiDBLite consensus disorder prediction 428 444 - -
Vium940g00049 1255 MobiDBLite consensus disorder prediction 1140 1159 - -
Vium940g00049 1255 ProSiteProfiles Zinc finger PHD-type profile. 65 186 IPR019787 -
Vium940g00049 1255 MobiDBLite consensus disorder prediction 894 918 - -
Vium940g00049 1255 MobiDBLite consensus disorder prediction 1131 1168 - -
Vium940g00049 1255 Coils Coil 521 541 - -
Vium940g00049 1255 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 125 189 IPR013083 -
Vium940g00049 1255 MobiDBLite consensus disorder prediction 425 461 - -
Vium940g00049 1255 PANTHER RING FINGER PROTEIN 41, 151 115 1245 - -
Vium940g00049 1255 MobiDBLite consensus disorder prediction 738 761 - -
Vium940g00049 1255 ProSiteProfiles Zinc finger RING-type profile. 33 72 IPR001841 -
Vium940g00049 1255 MobiDBLite consensus disorder prediction 744 758 - -
Vium940g00049 1255 Coils Coil 1246 1255 - -
Vium940g00049 1255 Pfam PHD-finger 147 184 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium940g00049 Vium-Chr940 266136 281055 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium940g00049 33 120 C3H Transcription Factor Family AT3G58030 32.632 1.89e-07 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vium940g00049 PHD 1.7e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium940g00049 - - gmx:100808102 1986.85