Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium940g00037 ATGGCTACCTCACCCATGCTATGTGCTTTCTGTCTCCTCCTTTTCCATCTCCAAACCGCAAGAGGGAATACCAACCAACACCCTAACTGTAACACCCTCAGATGCGGCCATTTAGACATTCTCTTTCCTTTCGGTCTGAAACAATCCAACCAAGATCCTCGCTGCAGCTATTTCCCAGTTCCAAGCTTCCAACTTTCTTGCATCAATCGCACACAACCAGTTATAGACGTCCCAGGTTTCGGGAACCTCGTTGTGAAAAACATCGACTACGACTCCCAAAGCATCCTAGTCAACGACCCCAATGGGTGCCTTCCAAAACGTTTCTTACACGGGTGGAACCTTTCCGGTTCACCTTTTATTTTGAACCCCAGGATTTATGGATCGTCTCCCTTTAACCTCACTTTCGTGCGTTGCCCCTCAAACGTCCAGGACTCGTCTCAGTTCCCGTTAATGCCAATTTCGTGCCTAAGCGACGACCGAAATTCGGTGATAGCTTCGTGGTCGCAACCTATTGTGTCGTCAACGGTGATGCCGGAACTGTGCCAAGTAATGTCTCACGCTCTCGTTCCTATTCCTGTGTTGGACATGCCCATGTGGCCCTTCTGGTCCGATCTCAACACAGACCTCGAATTAGTCTGGACCGAACCCAGGTGCAGCGATTGTGCACTCAGTGGTCAAGTTTGTGGGTTCTCTGATAAAAAAAATCAAAGTCTTCGAGTTGGGTGCTTCCCCAGGGACTCCGGCAAAGGTCTTTCGAGGAGTGCAAAGTATGGGTTAGCCATTGGAGTGGGAATACCGGGTCTGTTATGCTTCATCGGAATGTCTTGTTTTGTCTGCGGTAAGTTTAGGACGCTGAGCCACCGTCGACGTGGCACACATCTTCCCATCACCATTTCCCTGCAACCCGTTCCTTTTGCGGCGGGTCTTGACGGTGCGACGATTGAAAAGTATCCGAAAACTCTGATCGGAGAGAGTGGTCGGTTATTGAAGCCGAGCGACAACACCTGCGCAATTTGCCTCTCGGAATATGAACCCAAAGAGACGCTAAGGAGTATTCCCGAATGTGACCACTATTTTCACGCAGATTGCATCGACGAGTGGCTCAAGTTGAACGGCACCTGCCCCCTCTGCCGGAATTCCCCGGAAACATCAACGGCTTCCTTTTCTTCTTCCTCTCCCACTTCCTCCTCATTCTCCTCTCCACAATAG 1209 0.5029 MATSPMLCAFCLLLFHLQTARGNTNQHPNCNTLRCGHLDILFPFGLKQSNQDPRCSYFPVPSFQLSCINRTQPVIDVPGFGNLVVKNIDYDSQSILVNDPNGCLPKRFLHGWNLSGSPFILNPRIYGSSPFNLTFVRCPSNVQDSSQFPLMPISCLSDDRNSVIASWSQPIVSSTVMPELCQVMSHALVPIPVLDMPMWPFWSDLNTDLELVWTEPRCSDCALSGQVCGFSDKKNQSLRVGCFPRDSGKGLSRSAKYGLAIGVGIPGLLCFIGMSCFVCGKFRTLSHRRRGTHLPITISLQPVPFAAGLDGATIEKYPKTLIGESGRLLKPSDNTCAICLSEYEPKETLRSIPECDHYFHADCIDEWLKLNGTCPLCRNSPETSTASFSSSSPTSSSFSSPQ 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium940g00037 402 ProSiteProfiles Zinc finger RING-type profile. 336 378 IPR001841 -
Vium940g00037 402 SUPERFAMILY RING/U-box 329 382 - -
Vium940g00037 402 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 6 381 IPR046948 -
Vium940g00037 402 MobiDBLite consensus disorder prediction 383 402 - -
Vium940g00037 402 CDD RING-H2_EL5-like 336 378 - -
Vium940g00037 402 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 305 383 IPR013083 -
Vium940g00037 402 Pfam Ring finger domain 334 378 IPR001841 -
Vium940g00037 402 SMART ring_2 336 377 IPR001841 -
Vium940g00037 402 Pfam Wall-associated receptor kinase galacturonan-binding 30 99 IPR025287 GO:0030247
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium940g00037 Vium-Chr940 219095 221742 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium940g00037 27 381 C3H Transcription Factor Family AT2G46495 36.639 2.24e-54 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium940g00037 - - gmx:100810240 582.022