Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium940g00012 ATGGCGAGTGAATGGAGCTGGGAGCAGAACACACTCATCAATGAGCTAATTCAAGGGATGGAGTTAGCAAGGAAGTTGAAGGAAGACTTGAGACTGCCGTATTCAGTTGACTCAAAAGACATGCTGCTGCAGAGGATACTATCTTCTTATGAAAAGGCTCTACTGATTCTAAGATGCAATGCATCAACTTCCGACTTGCAGGCCACGAGTCAAGCACCAGCAGCTTTGTTACCGGAGTCCCCAATATCAGTCCATGGAAGTCCTCTGAGTGAGGATCTTGATGGGGCCATCAAGGATCACCAAGAAACTCAACATGATTCAAAGAAAAGAAAGATAACGCCCAAATGGATGGATCATGTAAGAGTGAGCTGCGAGAGTGGTCTTGAAGGACCACAAGAAGATGGCTACAACTGGAGAAAATATGGTCAGAAAGACATCCTCGGAGCAAAATATCCCAGAAGTTACTATAGGTGCACCTTCCGCAACACACAGGGCTGTTGGGCAACGAAGCAAGTGCAGAGATCAGATGAAGATCCCACAATATTTGACATAACCTACAGAGGAAAGCATACCTGTTCTCAAGGAAACAACGCCGTTTTGCCACCTAAGTCACCAGACAAACAAGAGAAGACACACAGACATAACATTGACATGCACCATGCACAGGCATCACAAGAAAGCCTTACAAAGTTCAGAAACATCTTGTCTGTCAACACAGATAAACTAGACAATGGAGATATGGCATATCCTTTCACTTTCCCTTCGACTTCATCTGGATGCATGAAACCATACAGCCACAGCTTGATTCCTGGGACCCTAGAGAATGAGTACTTCTTGAGCGATCAATACCAAACGAACCTGTTATCTCCAACAACACCGGAATCAAACTATCTCCCATCCCCAACTTTCCAGATGAATGAGTTTGACGGAATCTACAACAAGCCTTATTCAGACTCAGATATTAATGAGATCATTTCCACCAACACATCAGCAACCAATTCTCCAATTCCCGATTTCAATTTCTCACTTGATCCAGTGGAAATTGACCCGAATTTCCCTTTCAACACCCCAGGATTTTTCTCCTGA 1086 0.4411 MASEWSWEQNTLINELIQGMELARKLKEDLRLPYSVDSKDMLLQRILSSYEKALLILRCNASTSDLQATSQAPAALLPESPISVHGSPLSEDLDGAIKDHQETQHDSKKRKITPKWMDHVRVSCESGLEGPQEDGYNWRKYGQKDILGAKYPRSYYRCTFRNTQGCWATKQVQRSDEDPTIFDITYRGKHTCSQGNNAVLPPKSPDKQEKTHRHNIDMHHAQASQESLTKFRNILSVNTDKLDNGDMAYPFTFPSTSSGCMKPYSHSLIPGTLENEYFLSDQYQTNLLSPTTPESNYLPSPTFQMNEFDGIYNKPYSDSDINEIISTNTSATNSPIPDFNFSLDPVEIDPNFPFNTPGFFS 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium940g00012 361 ProSiteProfiles WRKY domain profile. 127 190 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium940g00012 361 FunFam WRKY transcription factor 53 118 195 - -
Vium940g00012 361 MobiDBLite consensus disorder prediction 193 213 - -
Vium940g00012 361 Pfam WRKY DNA -binding domain 133 192 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium940g00012 361 SMART WRKY_cls 132 194 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium940g00012 361 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 6 272 IPR044810 GO:0003700
Vium940g00012 361 SUPERFAMILY WRKY DNA-binding domain 131 194 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium940g00012 361 Gene3D WRKY domain 118 195 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium940g00012 Vium-Chr940 93272 95003 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium940g00012 6 256 WRKY Transcription Factor Family AT4G23810 45.255 2.33e-67 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vium940g00012 WRKY 8.3e-27 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium940g00012 - - gmx:100815760 647.506