Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium940g00006 ATGGGTGACACAGTTGTTCCTGTAGCCACGAAGAGGGGGAGGGGCAGAAGGGTCCTGAAGGACAAAACCCCATCAACAAACGAGACCAACATCATTGCCGGTAAGGTTTCTGAGTCCTCAGCGACTCCAATTTCACCCTCGTCGAAACAAGATTCCAAGAAGCAGCAATCTTTCGAGAAAGAATTGCTAGAGATGCAGGAAATGTTGCAGCAGATGCGCCTGGATAAGGAGAAGACTGAAGAGCTTTTGAAGGCCAAAGACGAAGCTCTGAAGCAGAAGGATGAAGAGCTCCAAAACCGTGGCCGTGAACAAGAGAAGCTTCAAGTTGAGCTGAAAAAACTGCAGAAATTGAAGGAGTTTAAACCAACTATGAATTTGCCTGTGATGAAAGATAATGAAACAAAGAAGGACAAGAAGAAGAAAGCAGGCGGCTCTGAGAAGAAAAGACCTTCTCCACCTTATATTTTGTGGATGAAAGACCAATGGAATGAGATAAAGAAAACGAACCCAGCGGCAGAGTTTAAGGAAACTTCTAACATGTTGGGGGCTAAATGGAAGACTGTGAGTGCAGAGGAGAAGAAGCCTTATGAGGAGAAATATCATGCTGAGAAAGAAGCTTATTTGCAAGTGATTGCAAAGGAAAAGCGTGAGAGTGAGGCAATGAGGTTGTTTGAAGAAGAGCAGAAACAGAGGACTGCCATGGAATTGCTTGAACAGTACATGCAATTCAAACAAGGGGCAGAAAAAGAAACCAAGAAGAACAAGAAAGAGAAGGATCCATTGAAACCAAAGCACCCCATGTCTGCTTATTTCTTGTTCACCAATGATAGGCGAGCAGCCCTTCTTGCTGAAAACAAGAATTTCTTGGAGGTTCCAAAGATCACAGCCGAAGAGTGGAAAAACATGACAGAGGAACAAAAGAAACCCTATGAAGAGATGGCAAAGAAGAACAAAGAGAAATATGCTTTAGAAATGGAGGCGTATAAGCAGAAGAAAGATGAGGAGGCTGCCCACCTCATGAAGGAGGAGGAGGAGCATATGAAACTTCAGAAACAAGAAGCTCTGCAACTGCTGAAGAAGAAGGAGAAAACTGATAATATTATCAAGAAAACTAAACAGAATCTTCAGAAGAAGAAACAAAATAAGGAAGAAAAGAATTCTGATCCAAACAGGCCTAAGAGGCCTCCATCATCGTTCATCCTATTCGGTAAAGAAGCTAGGAAGACTTTACAAGATGAAAGACCAGGAATCAACGCATCAACCCTTAATGCACTTGTCTCATTGAAGTGGAAGGAACTGAGTGAGGAAGATAGGCAATTCTGGAATAGCCAAGCTTCTGATGCAATGGACTTGTACAAGAAGGAGATGGAGGAATACAACAAATCTCTTCCTGCAAAAACCGAATAA 1407 0.4264 MGDTVVPVATKRGRGRRVLKDKTPSTNETNIIAGKVSESSATPISPSSKQDSKKQQSFEKELLEMQEMLQQMRLDKEKTEELLKAKDEALKQKDEELQNRGREQEKLQVELKKLQKLKEFKPTMNLPVMKDNETKKDKKKKAGGSEKKRPSPPYILWMKDQWNEIKKTNPAAEFKETSNMLGAKWKTVSAEEKKPYEEKYHAEKEAYLQVIAKEKRESEAMRLFEEEQKQRTAMELLEQYMQFKQGAEKETKKNKKEKDPLKPKHPMSAYFLFTNDRRAALLAENKNFLEVPKITAEEWKNMTEEQKKPYEEMAKKNKEKYALEMEAYKQKKDEEAAHLMKEEEEHMKLQKQEALQLLKKKEKTDNIIKKTKQNLQKKKQNKEEKNSDPNRPKRPPSSFILFGKEARKTLQDERPGINASTLNALVSLKWKELSEEDRQFWNSQASDAMDLYKKEMEEYNKSLPAKTE 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium940g00006 468 MobiDBLite consensus disorder prediction 85 106 - -
Vium940g00006 468 Pfam HMG (high mobility group) box 148 209 IPR009071 -
Vium940g00006 468 Pfam HMG (high mobility group) box 263 329 IPR009071 -
Vium940g00006 468 Pfam HMG (high mobility group) box 392 460 IPR009071 -
Vium940g00006 468 Coils Coil 311 388 - -
Vium940g00006 468 MobiDBLite consensus disorder prediction 343 391 - -
Vium940g00006 468 SUPERFAMILY HMG-box 250 335 IPR036910 -
Vium940g00006 468 SUPERFAMILY HMG-box 387 464 IPR036910 -
Vium940g00006 468 MobiDBLite consensus disorder prediction 24 52 - -
Vium940g00006 468 MobiDBLite consensus disorder prediction 343 401 - -
Vium940g00006 468 Coils Coil 442 462 - -
Vium940g00006 468 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 147 215 IPR009071 -
Vium940g00006 468 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 392 460 IPR009071 -
Vium940g00006 468 MobiDBLite consensus disorder prediction 130 147 - -
Vium940g00006 468 Gene3D High mobility group box domain 372 468 IPR036910 -
Vium940g00006 468 Gene3D High mobility group box domain 130 236 IPR036910 -
Vium940g00006 468 Gene3D High mobility group box domain 246 343 IPR036910 -
Vium940g00006 468 MobiDBLite consensus disorder prediction 245 264 - -
Vium940g00006 468 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 7 466 IPR044601 GO:0003677
Vium940g00006 468 Coils Coil 55 117 - -
Vium940g00006 468 SMART hmgende2 146 216 IPR009071 -
Vium940g00006 468 SMART hmgende2 262 330 IPR009071 -
Vium940g00006 468 SMART hmgende2 391 461 IPR009071 -
Vium940g00006 468 MobiDBLite consensus disorder prediction 1 58 - -
Vium940g00006 468 SUPERFAMILY HMG-box 134 210 IPR036910 -
Vium940g00006 468 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 263 329 IPR009071 -
Vium940g00006 468 MobiDBLite consensus disorder prediction 244 266 - -
Vium940g00006 468 MobiDBLite consensus disorder prediction 120 154 - -
Vium940g00006 468 CDD HMG-box_AtHMGB6-like_rpt1 148 215 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Vium940g00006 HMG_box 3e-15 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium940g00006 K09273 - gmx:100783033 635.18