Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium940g00001 ATGGCTTCGTCTGCCATCAAGCAAACACAACACCTTAACCGCACCAAACTCCTCGTCCAAGAACACACCCTTTTGAAAAACCATCACCATCCCAAACTCGTGCGGATACGTGTCACCGACGCCGACGCCACGGACTCCTCCAGCGACGACGAGCAGCCCTCCGTGCCCTCCACGCGCCGCAGAGTCAAAAGCTTCGTCAACGAGATTACCATCCACGGCGCCCGAGTTAAAGTTGTTTCCAGGAAAAGAAAGGTGAAGTCTGGCGGCGCTCCGGCGCTCCGGCGGCGAACTGGGGCGAGGAAGTTCCGCGGAGTGAGGCAGCGGCCGTGGGGGAAATGGGCGGCTGAGATAAGTGACCCGTCGCGCCGCGTGAGGCTGTGGCTGGGCACTTACGACACCGCCGAGGAAGCCGCCATTGTGTACGACAACGCCGCCATTCAGCTGCGTGGCGCCGACGCGCTCACCAATTTCATAACGCCCCCGGCGGAGGACAGAAAAACCGGTTACTGCTCGGGCGAGGAGTCTCCCAGTGAGGAGCTGCGTTCCCCCACTTCGGTTCTTCGGTGCTGTTGGGCGTCCGAGGAAGCTGAATCGGTAACCGCAAACGACGCGGTTGGTCCGGCGAGCGAGTGCGAACATTCATGGTTTTCAGAGGATAGTAAGTTGAAAGACGAGTCAGTGTTTGGTATTCCTGAGGACGTTGTATTCGGATTTGAAAGCACTTTGGATATGTTTGACGAGTGTGATAACAACGTTGCAGAGAGCAGTGGTATATTCTTGGGCGATGATTTTGATTTGAGTGGATGCTTTGTTAGTGAGAAAGAGAATTTAGATTTGGGTTTTGGTTTTGGGTTTACGAGTTGGAGTTGGCAAAGAGAGTGCGATAATTTCCAAGACATTGGGGATTTGTTTCTTTGGGATCCTCTTGTTGCTCTTTGA 939 0.5453 MASSAIKQTQHLNRTKLLVQEHTLLKNHHHPKLVRIRVTDADATDSSSDDEQPSVPSTRRRVKSFVNEITIHGARVKVVSRKRKVKSGGAPALRRRTGARKFRGVRQRPWGKWAAEISDPSRRVRLWLGTYDTAEEAAIVYDNAAIQLRGADALTNFITPPAEDRKTGYCSGEESPSEELRSPTSVLRCCWASEEAESVTANDAVGPASECEHSWFSEDSKLKDESVFGIPEDVVFGFESTLDMFDECDNNVAESSGIFLGDDFDLSGCFVSEKENLDLGFGFGFTSWSWQRECDNFQDIGDLFLWDPLVAL 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium940g00001 312 SMART rav1_2 101 164 IPR001471 GO:0003700|GO:0006355
Vium940g00001 312 CDD AP2 101 157 IPR001471 GO:0003700|GO:0006355
Vium940g00001 312 MobiDBLite consensus disorder prediction 39 60 - -
Vium940g00001 312 FunFam Ethylene-responsive transcription factor 2 100 159 - -
Vium940g00001 312 PRINTS Ethylene responsive element binding protein signature 124 140 IPR001471 GO:0003700|GO:0006355
Vium940g00001 312 PRINTS Ethylene responsive element binding protein signature 102 113 IPR001471 GO:0003700|GO:0006355
Vium940g00001 312 Gene3D AP2/ERF domain 100 159 IPR036955 GO:0003700|GO:0006355
Vium940g00001 312 ProSiteProfiles AP2/ERF domain profile. 101 158 IPR001471 GO:0003700|GO:0006355
Vium940g00001 312 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 30 210 - -
Vium940g00001 312 SUPERFAMILY DNA-binding domain 101 157 IPR016177 GO:0003677
Vium940g00001 312 Pfam AP2 domain 101 150 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium940g00001 Vium-Chr940 1076 2666 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium940g00001 1 312 AP2-EREBP Transcription Factor Family AT4G23750 39.831 1.67e-55 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium940g00001 AP2 2.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium940g00001 - - gmx:100813992 422.935