Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9408g00007 ATGGCGCAGAGTAATTGGGAAGCAGATAAGATGCTTGATGTTTATATTTATGATTATTTGGTGAAGAAGAAGTTGCATAACACTGCTAAAGCATTCATGACAGAAGGGAAGGTTTCTCCTGATCCTGTCGCAATTGATGCTCCTGGTGGTTTTCTTTTTGAGTGGTGGTCTGTTTTTTGGGATATTTTTATTGCACGGACAAATGAGAAACATTCAGAGACTGCTGCAGCATATTTGGAGGCACAACAGAATAAAGTGAAAGAGCAACAGCAACTGCAAATTCAGCATATGCAATTAATTCGTCAAGCTCAACTTCAAAGAAGGGATTCTAATCATCCTCCCCTAGGAGGCCCTGTAAATGCTATCACTACAGAAGGAGTGCTTGGGCAATCTACTGCAAGTGCTTTGGCTGCAAAAATGTATGAGGAGCGGATGAAGCACTCTAACCCCATGGACACAGAGACATCCCAACCACTTTTAGACCCTAGAATGGCCATCTTGAAATCAACAAATCATCCTGGTCAGATGGTTCAAGGAAATTCAGGAAGTGTGACGGCAGCTTTGCAGCAAATCCAGGCTCGAACACAGCAAACCCCTCAGGATATCAAAGGTGAAGTCAACATGGGTGCCATGCAGAGATCCTTGCCTATGGACCCTTCATCAATTTATGGGCAGGGAGGAATGCAGTCAAAGACTGGCATTGCAAACACAGGATTAAATGCTGGAGTAGGTAGTCTCACATTGAAAGGATGGCCTTTAACTGGCATTGATCAAATTCGTCCTGGTTTTGGAGCACCAGTTCAGAAGCCTCTCCTTCAGAGTGCAAATCAGTTTCAGCTTTTACCTCAACCACAACAGCAGCAGCTCCTTGCACAGGTACAGGCGCAAGGAAATATTGGCAATTCACCAGTTTATGGAGATATGGATCCTCAAAGATTAAGGGGATTAAATAGGGGAAGTTTGAACGCAAAAGACGGTCAATCAATTGCAAATGATGGATCTATAGGCTCTCCAATGCAATCTACTTCCTCTAAGATCAACATGCCACAGATCCAACAATCCACCTCCCAGCAACAACAGGATCCTTTGCATCCACAACAATTGATTCAGAATAATCGGAAAAGGAAGGGACCTACATCTTCAGGACCTGCAAACAGTACTGGAACAGGAAATACACTTGGCCCTTCTAATTCTCAGCCATCAACTCCATCGACTCATACTCCTGGTGATGGAGTTGCAATGACGGGTAACTTGCAGAATGTTGCTGGCGTATCCAAAGGCTTGATGATGTATGGTACTGATGGACCGGGTGGTCTTGCATCTTCCACAAATCAACTGTTGCAGGATGACATGGAACATTTTGGGGATGTTGGTTCCTTAGAGGATAATGTGGAATCATTTCTCTCACAGGATGATGGTGATGGAAGGGACTTGTTTGGCACGTTGAAACGGAACCCTTCTGAGCATGCTACAGATGCTTCGAAAGGCTTTTCCTTCAGTGAAGTTAGTTCTATCCGCAAAAGCAATAGCAAAGTTGTTTGCTGTCATTTCTCTTCAGATGGGAAATTATTGGCTAGTGCTGGACATGACAAAAAGGTTGTTCTGTGGAACATGGAGACACTGCAAACAGAGAGTACACCAGAGGAACACAGCCTTATTATTACTGATGTTCGCTTCAGACCGAATTCCACTCAGCTGGCAACATCTTCATTTGATACAACTGTTCGGTTGTGGGATGCTGCTGATCCAACCTTTTCTTTACAGGCATATAGTGGCCATACTTCACACGTGGTGTCCCTTGATTTTCACCCAAAGAAAAATGATCTTTTCTGTTCCTGTGATGATAACAATGAGATCCGTATCTGGAATATTAACCAATATTCTTGCAGCCGAGTTTTTAAGGGAGGATCAACCCAGGTGAGGTTTCAGCCAAGGGTTGGTCAACTTCTGGCTGCAGCAAGTGGGAGTCTAGTGTCTCTCTTTGATGTTGAGACTGATAGGCAGATGCACATGTTTCAGGGACACTCTGCAGACGTACATTGTGTCTGTTGGGATTCAAATGGAGATTACTTGGCTTCTGTGAGTCAAGAATCTGTCAAAGTGTGGTCACTTGCATCTGGGGAGTGCATTCATGAACTTAATTCCAGTGGAAACATGTATCATTCTTGTGTCTTTCACCCAAGCTACTCAACTCTCTTGGTTATTGGAGGATACCAGGTATGTGCCTATGAAGCTTTGTTGTTTGCTATTCATTGTCACTTCTTTTATTGTTTATTTGGTTTATATGTGTGA 2292 0.435 MAQSNWEADKMLDVYIYDYLVKKKLHNTAKAFMTEGKVSPDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSETAAAYLEAQQNKVKEQQQLQIQHMQLIRQAQLQRRDSNHPPLGGPVNAITTEGVLGQSTASALAAKMYEERMKHSNPMDTETSQPLLDPRMAILKSTNHPGQMVQGNSGSVTAALQQIQARTQQTPQDIKGEVNMGAMQRSLPMDPSSIYGQGGMQSKTGIANTGLNAGVGSLTLKGWPLTGIDQIRPGFGAPVQKPLLQSANQFQLLPQPQQQQLLAQVQAQGNIGNSPVYGDMDPQRLRGLNRGSLNAKDGQSIANDGSIGSPMQSTSSKINMPQIQQSTSQQQQDPLHPQQLIQNNRKRKGPTSSGPANSTGTGNTLGPSNSQPSTPSTHTPGDGVAMTGNLQNVAGVSKGLMMYGTDGPGGLASSTNQLLQDDMEHFGDVGSLEDNVESFLSQDDGDGRDLFGTLKRNPSEHATDASKGFSFSEVSSIRKSNSKVVCCHFSSDGKLLASAGHDKKVVLWNMETLQTESTPEEHSLIITDVRFRPNSTQLATSSFDTTVRLWDAADPTFSLQAYSGHTSHVVSLDFHPKKNDLFCSCDDNNEIRIWNINQYSCSRVFKGGSTQVRFQPRVGQLLAAASGSLVSLFDVETDRQMHMFQGHSADVHCVCWDSNGDYLASVSQESVKVWSLASGECIHELNSSGNMYHSCVFHPSYSTLLVIGGYQVCAYEALLFAIHCHFFYCLFGLYV 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9408g00007 763 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 547 579 - -
Vium9408g00007 763 ProSiteProfiles Trp-Asp (WD) repeats profile. 672 712 IPR001680 GO:0005515
Vium9408g00007 763 ProSiteProfiles Trp-Asp (WD) repeats profile. 547 579 IPR001680 GO:0005515
Vium9408g00007 763 SMART WD40_4 498 537 IPR001680 GO:0005515
Vium9408g00007 763 SMART WD40_4 706 744 IPR001680 GO:0005515
Vium9408g00007 763 SMART WD40_4 626 662 IPR001680 GO:0005515
Vium9408g00007 763 SMART WD40_4 583 623 IPR001680 GO:0005515
Vium9408g00007 763 SMART WD40_4 540 579 IPR001680 GO:0005515
Vium9408g00007 763 SMART WD40_4 665 703 IPR001680 GO:0005515
Vium9408g00007 763 SUPERFAMILY WD40 repeat-like 499 736 IPR036322 GO:0005515
Vium9408g00007 763 Gene3D - 481 639 IPR015943 GO:0005515
Vium9408g00007 763 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 590 625 - -
Vium9408g00007 763 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 740 IPR044716 GO:0003714
Vium9408g00007 763 ProSiteProfiles Trp-Asp (WD) repeats profile. 590 632 IPR001680 GO:0005515
Vium9408g00007 763 SMART Lish 8 40 IPR006594 GO:0005515
Vium9408g00007 763 MobiDBLite consensus disorder prediction 301 416 - -
Vium9408g00007 763 ProSitePatterns Trp-Asp (WD) repeats signature. 524 538 IPR019775 -
Vium9408g00007 763 Pfam WD domain, G-beta repeat 546 579 IPR001680 GO:0005515
Vium9408g00007 763 Pfam WD domain, G-beta repeat 587 623 IPR001680 GO:0005515
Vium9408g00007 763 Pfam WD domain, G-beta repeat 668 703 IPR001680 GO:0005515
Vium9408g00007 763 Pfam WD domain, G-beta repeat 510 537 IPR001680 GO:0005515
Vium9408g00007 763 MobiDBLite consensus disorder prediction 321 416 - -
Vium9408g00007 763 ProSitePatterns Glutamate 5-kinase signature. 221 238 IPR019797 GO:0004349|GO:0006561
Vium9408g00007 763 CDD WD40 501 737 - -
Vium9408g00007 763 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Vium9408g00007 763 ProSiteProfiles Trp-Asp (WD) repeats profile. 505 546 IPR001680 GO:0005515
Vium9408g00007 763 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 505 540 - -
Vium9408g00007 763 Gene3D - 640 741 IPR015943 GO:0005515
Vium9408g00007 763 Pfam LisH 10 36 IPR006594 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9408g00007 Vium-Chr9408 6951 30821 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9408g00007 499 704 U-box Gene Family AT2G33340 27.315 9.60e-15 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Vium9408g00007 WD40 3.1e-06 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9408g00007 - - var:108326218 1422.91