Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9408g00005 ATGCAGTCTCGGATTGCAGTTAATTTTGCTTCTGAACGGGGAATCATGGCGCAGAGTAATTGGGAAGCAGATAAGATGCTTGATGTTTATATTTATGATTATTTGGTGAAGAAGAAGTTGCATAACACTGCTAAAGCATTCATGACAGAAGGGAAGGTTTCTCCTGATCCTGTCGCAATTGATGCTCCTGGTGGTTTTCTTTTTGAGTGGTGGTCTGTTTTTTGGGATATTTTTATTGCACGGACAAATGAGAAACATTCAGAGACTGCTGCAGCATATTTGGAGGCACAACAGAATAAAGTGAAAGAGCAACAGCAACTGCAAATTCAGCATATGCAATTAATTCGTCAAGCTCAACTTCAAAGAAGGGATTCTAATCATCCTCCCCTAGGAGGCCCTGTAAATGCTATCACTACAGAAGGAGTGCTTGGGCAATCTACTGCAAGTGCTTTGGCTGCAAAAATGTATGAGGAGCGGATGAAGCACTCTAACCCCATGGACACAGAGACATCCCAACCACTTTTAGACCCTAGAATGGCCATCTTGAAATCAACAAATCATCCTGGTCAGATGGTTCAAGGAAATTCAGGAAGTGTGACGGCAGCTTTGCAGCAAATCCAGGCTCGAACACAGCAAACCCCTCAGGATATCAAAGGTGAAGTCAACATGGGTGCCATGCAGAGATCCTTGCCTATGGACCCTTCATCAATTTATGGGCAGGGAGGAATGCAGTCAAAGACTGGCATTGCAAACACAGGATTAAATGCTGGAGTAGGTAGTCTCACATTGAAAGGATGGCCTTTAACTGGCATTGATCAAATTCGTCCTGGTTTTGGAGCACCAGTTCAGAAGCCTCTCCTTCAGAGTGCAAATCAGTTTCAGCTTTTACCTCAACCACAACAGCAGCAGCTCCTTGCACAGGTACAGGCGCAAGGAAATATTGGCAATTCACCAGTTTATGGAGATATGGATCCTCAAAGATTAAGGGGATTAAATAGGGGAAGTTTGAACGCAAAAGACGGTCAATCAATTGCAAATGATGGATCTATAGGCTCTCCAATGCAATCTACTTCCTCTAAGATCAACATGCCACAGATCCAACAATCCACCTCCCAGCAACAACAGGATCCTTTGCATCCACAACAATTGATTCAGAATAATCGGAAAAGGAAGGGACCTACATCTTCAGGACCTGCAAACAGTACTGGAACAGGAAATACACTTGGCCCTTCTAATTCTCAGCCATCAACTCCATCGACTCATACTCCTGGTGATGGAGTTGCAATGACGGGTAACTTGCAGAATGTTGCTGGCGTATCCAAAGGCTTGATGATGTATGGTACTGATGGACCGGGTGGTCTTGCATCTTCCACAAATCAACTGTTGCAGGATGACATGGAACATTTTGGGGATGTTGGTTCCTTAGAGGATAATGTGGAATCATTTCTCTCACAGGATGATGGTGATGGAAGGGACTTGTTTGGCACGTTGAAACGGAACCCTTCTGAGCATGCTACAGATGCTTCGAAAGGCTTTTCCTTCAGTGAAGTTAGTTCTATCCGCAAAAGCAATAGCAAAGTTGTTTGCTGTCATTTCTCTTCAGATGGGAAATTATTGGCTAGTGCTGGACATGACAAAAAGGTTGTTCTGTGGAACATGGAGACACTGCAAACAGAGAGTACACCAGAGGAACACAGCCTTATTATTACTGATGTTCGCTTCAGACCGAATTCCACTCAGCTGGCAACATCTTCATTTGATACAACTGTTCGGTTGTGGGATGCTGCTGATCCAACCTTTTCTTTACAGGCATATAGTGGCCATACTTCACACGTGGTGTCCCTTGATTTTCACCCAAAGAAAAATGATCTTTTCTGTTCCTGTGATGATAACAATGAGATCCGTATCTGGAATATTAACCAATATTCTTGCAGCCGAGTTTTTAAGGGAGGATCAACCCAGGTGAGGTTTCAGCCAAGGGTTGGTCAACTTCTGGCTGCAGCAAGTGGGAGTCTAGTGTCTCTCTTTGATGTTGAGACTGATAGGCAGATGCACATGTTTCAGGGACACTCTGCAGACGTACATTGTGTCTGTTGGGATTCAAATGGAGATTACTTGGCTTCTGTGAGTCAAGAATCTGTCAAAGTGTGGTCACTTGCATCTGGGGAGTGCATTCATGAACTTAATTCCAGTGGAAACATGTATCATTCTTGTGTCTTTCACCCAAGCTACTCAACTCTCTTGGTTATTGGAGGATACCAGGTATGTGCCTATGAAGCTTTGTTGTTTGCTATTCATTGTCACTTCTTTTATTGTTTATTTGGTTTATATGTGTGA 2337 0.4352 MQSRIAVNFASERGIMAQSNWEADKMLDVYIYDYLVKKKLHNTAKAFMTEGKVSPDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSETAAAYLEAQQNKVKEQQQLQIQHMQLIRQAQLQRRDSNHPPLGGPVNAITTEGVLGQSTASALAAKMYEERMKHSNPMDTETSQPLLDPRMAILKSTNHPGQMVQGNSGSVTAALQQIQARTQQTPQDIKGEVNMGAMQRSLPMDPSSIYGQGGMQSKTGIANTGLNAGVGSLTLKGWPLTGIDQIRPGFGAPVQKPLLQSANQFQLLPQPQQQQLLAQVQAQGNIGNSPVYGDMDPQRLRGLNRGSLNAKDGQSIANDGSIGSPMQSTSSKINMPQIQQSTSQQQQDPLHPQQLIQNNRKRKGPTSSGPANSTGTGNTLGPSNSQPSTPSTHTPGDGVAMTGNLQNVAGVSKGLMMYGTDGPGGLASSTNQLLQDDMEHFGDVGSLEDNVESFLSQDDGDGRDLFGTLKRNPSEHATDASKGFSFSEVSSIRKSNSKVVCCHFSSDGKLLASAGHDKKVVLWNMETLQTESTPEEHSLIITDVRFRPNSTQLATSSFDTTVRLWDAADPTFSLQAYSGHTSHVVSLDFHPKKNDLFCSCDDNNEIRIWNINQYSCSRVFKGGSTQVRFQPRVGQLLAAASGSLVSLFDVETDRQMHMFQGHSADVHCVCWDSNGDYLASVSQESVKVWSLASGECIHELNSSGNMYHSCVFHPSYSTLLVIGGYQVCAYEALLFAIHCHFFYCLFGLYV 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9408g00005 778 ProSiteProfiles LIS1 homology (LisH) motif profile. 23 55 IPR006594 GO:0005515
Vium9408g00005 778 ProSiteProfiles Trp-Asp (WD) repeats profile. 520 561 IPR001680 GO:0005515
Vium9408g00005 778 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 520 555 - -
Vium9408g00005 778 Pfam LisH 25 51 IPR006594 GO:0005515
Vium9408g00005 778 ProSitePatterns Glutamate 5-kinase signature. 236 253 IPR019797 GO:0004349|GO:0006561
Vium9408g00005 778 MobiDBLite consensus disorder prediction 316 431 - -
Vium9408g00005 778 SMART WD40_4 680 718 IPR001680 GO:0005515
Vium9408g00005 778 SMART WD40_4 598 638 IPR001680 GO:0005515
Vium9408g00005 778 SMART WD40_4 555 594 IPR001680 GO:0005515
Vium9408g00005 778 SMART WD40_4 513 552 IPR001680 GO:0005515
Vium9408g00005 778 SMART WD40_4 721 759 IPR001680 GO:0005515
Vium9408g00005 778 SMART WD40_4 641 677 IPR001680 GO:0005515
Vium9408g00005 778 ProSiteProfiles Trp-Asp (WD) repeats profile. 562 594 IPR001680 GO:0005515
Vium9408g00005 778 Pfam WD domain, G-beta repeat 525 552 IPR001680 GO:0005515
Vium9408g00005 778 Pfam WD domain, G-beta repeat 561 594 IPR001680 GO:0005515
Vium9408g00005 778 Pfam WD domain, G-beta repeat 602 638 IPR001680 GO:0005515
Vium9408g00005 778 Pfam WD domain, G-beta repeat 683 718 IPR001680 GO:0005515
Vium9408g00005 778 MobiDBLite consensus disorder prediction 336 431 - -
Vium9408g00005 778 CDD WD40 516 752 - -
Vium9408g00005 778 ProSiteProfiles Trp-Asp (WD) repeats profile. 605 647 IPR001680 GO:0005515
Vium9408g00005 778 Gene3D - 655 756 IPR015943 GO:0005515
Vium9408g00005 778 ProSiteProfiles Trp-Asp (WD) repeats profile. 687 727 IPR001680 GO:0005515
Vium9408g00005 778 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 605 640 - -
Vium9408g00005 778 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 562 594 - -
Vium9408g00005 778 Gene3D - 496 654 IPR015943 GO:0005515
Vium9408g00005 778 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 16 755 IPR044716 GO:0003714
Vium9408g00005 778 ProSitePatterns Trp-Asp (WD) repeats signature. 539 553 IPR019775 -
Vium9408g00005 778 SUPERFAMILY WD40 repeat-like 514 751 IPR036322 GO:0005515
Vium9408g00005 778 SMART Lish 23 55 IPR006594 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9408g00005 Vium-Chr9408 6951 30821 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9408g00005 514 719 U-box Gene Family AT2G33340 27.315 8.68e-15 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Vium9408g00005 WD40 3.2e-06 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9408g00005 - - var:108326218 1450.26