Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9408g00003 ATGCAGTCTCGGATTGCAGTTAATTTTGCTTCTGAACGGGGAATCATGGCGCAGAGTAATTGGGAAGCAGATAAGATGCTTGATGTTTATATTTATGATTATTTGGTGAAGAAGAAGTTGCATAACACTGCTAAAGCATTCATGACAGAAGGGAAGGTTTCTCCTGATCCTGTCGCAATTGATGCTCCTGGTGGTTTTCTTTTTGAGTGGTGGTCTGTTTTTTGGGATATTTTTATTGCACGGACAAATGAGAAACATTCAGAGACTGCTGCAGCATATTTGGAGGCACAACAGAATAAAGTGAAAGAGCAACAGCAACTGCAAATTCAGCATATGCAATTAATTCGTCAAGCTCAACTTCAAAGAAGGGATTCTAATCATCCTCCCCTAGGAGGCCCTGTAAATGCTATCACTACAGAAGGAGTGCTTGGGCAATCTACTGCAAGTGCTTTGGCTGCAAAAATGTATGAGGAGCGGATGAAGCACTCTAACCCCATGGACACAGAGACATCCCAACCACTTTTAGACCCTAGAATGGCCATCTTGAAATCAACAAATCATCCTGGTCAGATGGTTCAAGGAAATTCAGGAAGTGTGACGGCAGCTTTGCAGCAAATCCAGGCTCGAACACAGCAAACCCCTCAGGATATCAAAGGTGAAGTCAACATGGGTGCCATGCAGAGATCCTTGCCTATGGACCCTTCATCAATTTATGGGCAGGGAGGAATGCAGTCAAAGACTGGCATTGCAAACACAGGATTAAATGCTGGAGTAGGTAGTCTCACATTGAAAGGATGGCCTTTAACTGGCATTGATCAAATTCGTCCTGGTTTTGGAGCACCAGTTCAGAAGCCTCTCCTTCAGAGTGCAAATCAGTTTCAGCTTTTACCTCAACCACAACAGCAGCAGCTCCTTGCACAGGTACAGGCGCAAGGAAATATTGGCAATTCACCAGTTTATGGAGATATGGATCCTCAAAGATTAAGGGGATTAAATAGGGGAAGTTTGAACGCAAAAGACGGTCAATCAATTGCAAATGATGGATCTATAGGCTCTCCAATGCAATCTACTTCCTCTAAGATCAACATGCCACAGATCCAACAATCCACCTCCCAGCAACAACAGGATCCTTTGCATCCACAACAATTGATTCAGAATAATCGGAAAAGGAAGGGACCTACATCTTCAGGACCTGCAAACAGTACTGGAACAGGAAATACACTTGGCCCTTCTAATTCTCAGCCATCAACTCCATCGACTCATACTCCTGGTGATGGAGTTGCAATGACGGGTAACTTGCAGAATGTTGCTGGCGTATCCAAAGGCTTGATGATGTATGGTACTGATGGACCGGGTGGTCTTGCATCTTCCACAAATCAACTGGATGACATGGAACATTTTGGGGATGTTGGTTCCTTAGAGGATAATGTGGAATCATTTCTCTCACAGGATGATGGTGATGGAAGGGACTTGTTTGGCACGTTGAAACGGAACCCTTCTGAGCATGCTACAGATGCTTCGAAAGGCTTTTCCTTCAGTGAAGTTAGTTCTATCCGCAAAAGCAATAGCAAAGTTGTTTGCTGTCATTTCTCTTCAGATGGGAAATTATTGGCTAGTGCTGGACATGACAAAAAGGTTGTTCTGTGGAACATGGAGACACTGCAAACAGAGAGTACACCAGAGGAACACAGCCTTATTATTACTGATGTTCGCTTCAGACCGAATTCCACTCAGCTGGCAACATCTTCATTTGATACAACTGTTCGGTTGTGGGATGCTGCTGATCCAACCTTTTCTTTACAGGCATATAGTGGCCATACTTCACACGTGGTGTCCCTTGATTTTCACCCAAAGAAAAATGATCTTTTCTGTTCCTGTGATGATAACAATGAGATCCGTATCTGGAATATTAACCAATATTCTTGCAGCCGAGTTTTTAAGGGAGGATCAACCCAGGTGAGGTTTCAGCCAAGGGTTGGTCAACTTCTGGCTGCAGCAAGTGGGAGTCTAGTGTCTCTCTTTGATGTTGAGACTGATAGGCAGATGCACATGTTTCAGGGACACTCTGCAGACGTACATTGTGTCTGTTGGGATTCAAATGGAGATTACTTGGCTTCTGTGAGTCAAGAATCTGTCAAAGTGTGGTCACTTGCATCTGGGGAGTGCATTCATGAACTTAATTCCAGTGGAAACATGTATCATTCTTGTGTCTTTCACCCAAGCTACTCAACTCTCTTGGTTATTGGAGGATACCAGGTATGTGCCTATGAAGCTTTGTTGTTTGCTATTCATTGTCACTTCTTTTATTGTTTATTTGGTTTATATGTGTGA 2331 0.435 MQSRIAVNFASERGIMAQSNWEADKMLDVYIYDYLVKKKLHNTAKAFMTEGKVSPDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSETAAAYLEAQQNKVKEQQQLQIQHMQLIRQAQLQRRDSNHPPLGGPVNAITTEGVLGQSTASALAAKMYEERMKHSNPMDTETSQPLLDPRMAILKSTNHPGQMVQGNSGSVTAALQQIQARTQQTPQDIKGEVNMGAMQRSLPMDPSSIYGQGGMQSKTGIANTGLNAGVGSLTLKGWPLTGIDQIRPGFGAPVQKPLLQSANQFQLLPQPQQQQLLAQVQAQGNIGNSPVYGDMDPQRLRGLNRGSLNAKDGQSIANDGSIGSPMQSTSSKINMPQIQQSTSQQQQDPLHPQQLIQNNRKRKGPTSSGPANSTGTGNTLGPSNSQPSTPSTHTPGDGVAMTGNLQNVAGVSKGLMMYGTDGPGGLASSTNQLDDMEHFGDVGSLEDNVESFLSQDDGDGRDLFGTLKRNPSEHATDASKGFSFSEVSSIRKSNSKVVCCHFSSDGKLLASAGHDKKVVLWNMETLQTESTPEEHSLIITDVRFRPNSTQLATSSFDTTVRLWDAADPTFSLQAYSGHTSHVVSLDFHPKKNDLFCSCDDNNEIRIWNINQYSCSRVFKGGSTQVRFQPRVGQLLAAASGSLVSLFDVETDRQMHMFQGHSADVHCVCWDSNGDYLASVSQESVKVWSLASGECIHELNSSGNMYHSCVFHPSYSTLLVIGGYQVCAYEALLFAIHCHFFYCLFGLYV 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9408g00003 776 CDD WD40 514 750 - -
Vium9408g00003 776 ProSiteProfiles LIS1 homology (LisH) motif profile. 23 55 IPR006594 GO:0005515
Vium9408g00003 776 Pfam LisH 25 51 IPR006594 GO:0005515
Vium9408g00003 776 ProSitePatterns Glutamate 5-kinase signature. 236 253 IPR019797 GO:0004349|GO:0006561
Vium9408g00003 776 ProSiteProfiles Trp-Asp (WD) repeats profile. 685 725 IPR001680 GO:0005515
Vium9408g00003 776 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 603 638 - -
Vium9408g00003 776 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 560 592 - -
Vium9408g00003 776 Gene3D - 494 652 IPR015943 GO:0005515
Vium9408g00003 776 ProSitePatterns Trp-Asp (WD) repeats signature. 537 551 IPR019775 -
Vium9408g00003 776 Gene3D - 653 754 IPR015943 GO:0005515
Vium9408g00003 776 MobiDBLite consensus disorder prediction 316 431 - -
Vium9408g00003 776 SMART WD40_4 553 592 IPR001680 GO:0005515
Vium9408g00003 776 SMART WD40_4 596 636 IPR001680 GO:0005515
Vium9408g00003 776 SMART WD40_4 719 757 IPR001680 GO:0005515
Vium9408g00003 776 SMART WD40_4 511 550 IPR001680 GO:0005515
Vium9408g00003 776 SMART WD40_4 639 675 IPR001680 GO:0005515
Vium9408g00003 776 SMART WD40_4 678 716 IPR001680 GO:0005515
Vium9408g00003 776 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 518 553 - -
Vium9408g00003 776 MobiDBLite consensus disorder prediction 336 431 - -
Vium9408g00003 776 ProSiteProfiles Trp-Asp (WD) repeats profile. 518 559 IPR001680 GO:0005515
Vium9408g00003 776 ProSiteProfiles Trp-Asp (WD) repeats profile. 560 592 IPR001680 GO:0005515
Vium9408g00003 776 ProSiteProfiles Trp-Asp (WD) repeats profile. 603 645 IPR001680 GO:0005515
Vium9408g00003 776 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 16 753 IPR044716 GO:0003714
Vium9408g00003 776 Pfam WD domain, G-beta repeat 600 636 IPR001680 GO:0005515
Vium9408g00003 776 Pfam WD domain, G-beta repeat 559 592 IPR001680 GO:0005515
Vium9408g00003 776 Pfam WD domain, G-beta repeat 681 716 IPR001680 GO:0005515
Vium9408g00003 776 Pfam WD domain, G-beta repeat 523 550 IPR001680 GO:0005515
Vium9408g00003 776 SUPERFAMILY WD40 repeat-like 512 749 IPR036322 GO:0005515
Vium9408g00003 776 SMART Lish 23 55 IPR006594 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9408g00003 Vium-Chr9408 6950 30821 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9408g00003 512 717 U-box Gene Family AT2G33340 27.315 9.19e-15 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Vium9408g00003 WD40 3.2e-06 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9408g00003 - - var:108326218 1441.79