Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9408g00002 ATGCAGTCTCGGATTGCAGTTAATTTTGCTTCTGAACGGGGAATCATGGCGCAGAGTAATTGGGAAGCAGATAAGATGCTTGATGTTTATATTTATGATTATTTGGTGAAGAAGAAGTTGCATAACACTGCTAAAGCATTCATGACAGAAGGGAAGGTTTCTCCTGATCCTGTCGCAATTGATGCTCCTGGTGGTTTTCTTTTTGAGTGGTGGTCTGTTTTTTGGGATATTTTTATTGCACGGACAAATGAGAAACATTCAGAGACTGCTGCAGCATATTTGGAGGCACAACAGAATAAAGTGAAAGAGCAACAGCAACTGCAAATTCAGCATATGCAATTAATTCGTCAAGCTCAACTTCAAAGAAGGGATTCTAATCATCCTCCCCTAGGAGGCCCTGTAAATGCTATCACTACAGAAGGAGTGCTTGGGCAATCTACTGCAAGTGCTTTGGCTGCAAAAATGTATGAGGAGCGGATGAAGCACTCTAACCCCATGGACACAGAGACATCCCAACCACTTTTAGACCCTAGAATGGCCATCTTGAAATCAACAAATCATCCTGGTCAGATGGTTCAAGGAAATTCAGGAAGTGTGACGGCAGCTTTGCAGCAAATCCAGGCTCGAACACAGCAAACCCCTGATATCAAAGGTGAAGTCAACATGGGTGCCATGCAGAGATCCTTGCCTATGGACCCTTCATCAATTTATGGGCAGGGAGGAATGCAGTCAAAGACTGGCATTGCAAACACAGGATTAAATGCTGGAGTAGGTAGTCTCACATTGAAAGGATGGCCTTTAACTGGCATTGATCAAATTCGTCCTGGTTTTGGAGCACCAGTTCAGAAGCCTCTCCTTCAGAGTGCAAATCAGTTTCAGCTTTTACCTCAACCACAACAGCAGCAGCTCCTTGCACAGGTACAGGCGCAAGGAAATATTGGCAATTCACCAGTTTATGGAGATATGGATCCTCAAAGATTAAGGGGATTAAATAGGGGAAGTTTGAACGCAAAAGACGGTCAATCAATTGCAAATGATGGATCTATAGGCTCTCCAATGCAATCTACTTCCTCTAAGATCAACATGCCACAGATCCAACAATCCACCTCCCAGCAACAACAGGATCCTTTGCATCCACAACAATTGATTCAGAATAATCGGAAAAGGAAGGGACCTACATCTTCAGGACCTGCAAACAGTACTGGAACAGGAAATACACTTGGCCCTTCTAATTCTCAGCCATCAACTCCATCGACTCATACTCCTGGTGATGGAGTTGCAATGACGGGTAACTTGCAGAATGTTGCTGGCGTATCCAAAGGCTTGATGATGTATGGTACTGATGGACCGGGTGGTCTTGCATCTTCCACAAATCAACTGTTGCAGGATGACATGGAACATTTTGGGGATGTTGGTTCCTTAGAGGATAATGTGGAATCATTTCTCTCACAGGATGATGGTGATGGAAGGGACTTGTTTGGCACGTTGAAACGGAACCCTTCTGAGCATGCTACAGATGCTTCGAAAGGCTTTTCCTTCAGTGAAGTTAGTTCTATCCGCAAAAGCAATAGCAAAGTTGTTTGCTGTCATTTCTCTTCAGATGGGAAATTATTGGCTAGTGCTGGACATGACAAAAAGGTTGTTCTGTGGAACATGGAGACACTGCAAACAGAGAGTACACCAGAGGAACACAGCCTTATTATTACTGATGTTCGCTTCAGACCGAATTCCACTCAGCTGGCAACATCTTCATTTGATACAACTGTTCGGTTGTGGGATGCTGCTGATCCAACCTTTTCTTTACAGGCATATAGTGGCCATACTTCACACGTGGTGTCCCTTGATTTTCACCCAAAGAAAAATGATCTTTTCTGTTCCTGTGATGATAACAATGAGATCCGTATCTGGAATATTAACCAATATTCTTGCAGCCGAGTTTTTAAGGGAGGATCAACCCAGGTGAGGTTTCAGCCAAGGGTTGGTCAACTTCTGGCTGCAGCAAGTGGGAGTCTAGTGTCTCTCTTTGATGTTGAGACTGATAGGCAGATGCACATGTTTCAGGGACACTCTGCAGACGTACATTGTGTCTGTTGGGATTCAAATGGAGATTACTTGGCTTCTGTGAGTCAAGAATCTGTCAAAGTGTGGTCACTTGCATCTGGGGAGTGCATTCATGAACTTAATTCCAGTGGAAACATGTATCATTCTTGTGTCTTTCACCCAAGCTACTCAACTCTCTTGGTTATTGGAGGATACCAGGTATGTGCCTATGAAGCTTTGTTGTTTGCTATTCATTGTCACTTCTTTTATTGTTTATTTGGTTTATATGTGTGA 2334 0.4349 MQSRIAVNFASERGIMAQSNWEADKMLDVYIYDYLVKKKLHNTAKAFMTEGKVSPDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSETAAAYLEAQQNKVKEQQQLQIQHMQLIRQAQLQRRDSNHPPLGGPVNAITTEGVLGQSTASALAAKMYEERMKHSNPMDTETSQPLLDPRMAILKSTNHPGQMVQGNSGSVTAALQQIQARTQQTPDIKGEVNMGAMQRSLPMDPSSIYGQGGMQSKTGIANTGLNAGVGSLTLKGWPLTGIDQIRPGFGAPVQKPLLQSANQFQLLPQPQQQQLLAQVQAQGNIGNSPVYGDMDPQRLRGLNRGSLNAKDGQSIANDGSIGSPMQSTSSKINMPQIQQSTSQQQQDPLHPQQLIQNNRKRKGPTSSGPANSTGTGNTLGPSNSQPSTPSTHTPGDGVAMTGNLQNVAGVSKGLMMYGTDGPGGLASSTNQLLQDDMEHFGDVGSLEDNVESFLSQDDGDGRDLFGTLKRNPSEHATDASKGFSFSEVSSIRKSNSKVVCCHFSSDGKLLASAGHDKKVVLWNMETLQTESTPEEHSLIITDVRFRPNSTQLATSSFDTTVRLWDAADPTFSLQAYSGHTSHVVSLDFHPKKNDLFCSCDDNNEIRIWNINQYSCSRVFKGGSTQVRFQPRVGQLLAAASGSLVSLFDVETDRQMHMFQGHSADVHCVCWDSNGDYLASVSQESVKVWSLASGECIHELNSSGNMYHSCVFHPSYSTLLVIGGYQVCAYEALLFAIHCHFFYCLFGLYV 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9408g00002 777 ProSiteProfiles LIS1 homology (LisH) motif profile. 23 55 IPR006594 GO:0005515
Vium9408g00002 777 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 16 754 IPR044716 GO:0003714
Vium9408g00002 777 MobiDBLite consensus disorder prediction 315 430 - -
Vium9408g00002 777 Pfam LisH 25 51 IPR006594 GO:0005515
Vium9408g00002 777 Gene3D - 495 653 IPR015943 GO:0005515
Vium9408g00002 777 MobiDBLite consensus disorder prediction 335 430 - -
Vium9408g00002 777 CDD WD40 515 751 - -
Vium9408g00002 777 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 519 554 - -
Vium9408g00002 777 Pfam WD domain, G-beta repeat 524 551 IPR001680 GO:0005515
Vium9408g00002 777 Pfam WD domain, G-beta repeat 560 593 IPR001680 GO:0005515
Vium9408g00002 777 Pfam WD domain, G-beta repeat 601 637 IPR001680 GO:0005515
Vium9408g00002 777 Pfam WD domain, G-beta repeat 682 717 IPR001680 GO:0005515
Vium9408g00002 777 ProSiteProfiles Trp-Asp (WD) repeats profile. 519 560 IPR001680 GO:0005515
Vium9408g00002 777 ProSitePatterns Glutamate 5-kinase signature. 235 252 IPR019797 GO:0004349|GO:0006561
Vium9408g00002 777 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 604 639 - -
Vium9408g00002 777 ProSiteProfiles Trp-Asp (WD) repeats profile. 561 593 IPR001680 GO:0005515
Vium9408g00002 777 Gene3D - 654 755 IPR015943 GO:0005515
Vium9408g00002 777 ProSitePatterns Trp-Asp (WD) repeats signature. 538 552 IPR019775 -
Vium9408g00002 777 SUPERFAMILY WD40 repeat-like 513 750 IPR036322 GO:0005515
Vium9408g00002 777 ProSiteProfiles Trp-Asp (WD) repeats profile. 604 646 IPR001680 GO:0005515
Vium9408g00002 777 SMART WD40_4 554 593 IPR001680 GO:0005515
Vium9408g00002 777 SMART WD40_4 679 717 IPR001680 GO:0005515
Vium9408g00002 777 SMART WD40_4 597 637 IPR001680 GO:0005515
Vium9408g00002 777 SMART WD40_4 720 758 IPR001680 GO:0005515
Vium9408g00002 777 SMART WD40_4 640 676 IPR001680 GO:0005515
Vium9408g00002 777 SMART WD40_4 512 551 IPR001680 GO:0005515
Vium9408g00002 777 ProSiteProfiles Trp-Asp (WD) repeats profile. 686 726 IPR001680 GO:0005515
Vium9408g00002 777 SMART Lish 23 55 IPR006594 GO:0005515
Vium9408g00002 777 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 561 593 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9408g00002 Vium-Chr9408 6934 30822 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9408g00002 513 718 U-box Gene Family AT2G33340 27.315 8.73e-15 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Vium9408g00002 WD40 3.2e-06 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9408g00002 - - var:108326218 1453.34