Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9408g00001 ATGCAGTCTCGGATTGCAGTTAATTTTGCTTCTGAACGGGGAATCATGGCGCAGAGTAATTGGGAAGCAGATAAGATGCTTGATGTTTATATTTATGATTATTTGGTGAAGAAGAAGTTGCATAACACTGCTAAAGCATTCATGACAGAAGGGAAGGTTTCTCCTGATCCTGTCGCAATTGATGCTCCTGGTGGTTTTCTTTTTGAGTGGTGGTCTGTTTTTTGGGATATTTTTATTGCACGGACAAATGAGAAACATTCAGAGACTGCTGCAGCATATTTGGAGGCACAACAGAATAAAGTGAAAGAGCAACAGCAACTGCAAATTCAGCATATGCAATTAATTCGTCAAGCTCAACTTCAAAGAAGGGATTCTAATCATCCTCCCCTAGGAGGCCCTGTAAATGCTATCACTACAGAAGGAGTGCTTGGGCAATCTACTGCAAGTGCTTTGGCTGCAAAAATGTATGAGGAGCGGATGAAGCACTCTAACCCCATGGACACAGAGACATCCCAACCACTTTTAGACCCTAGAATGGCCATCTTGAAATCAACAAATCATCCTGGTCAGATGGTTCAAGGAAATTCAGGAAGTGTGACGGCAGCTTTGCAGCAAATCCAGGCTCGAACACAGCAAACCCCTGATATCAAAGGTGAAGTCAACATGGGTGCCATGCAGAGATCCTTGCCTATGGACCCTTCATCAATTTATGGGCAGGGAGGAATGCAGTCAAAGACTGGCATTGCAAACACAGGATTAAATGCTGGAGTAGGTAGTCTCACATTGAAAGGATGGCCTTTAACTGGCATTGATCAAATTCGTCCTGGTTTTGGAGCACCAGTTCAGAAGCCTCTCCTTCAGAGTGCAAATCAGTTTCAGCTTTTACCTCAACCACAACAGCAGCAGCTCCTTGCACAGGTACAGGCGCAAGGAAATATTGGCAATTCACCAGTTTATGGAGATATGGATCCTCAAAGATTAAGGGGATTAAATAGGGGAAGTTTGAACGCAAAAGACGGTCAATCAATTGCAAATGATGGATCTATAGGCTCTCCAATGCAATCTACTTCCTCTAAGATCAACATGCCACAGATCCAACAATCCACCTCCCAGCAACAACAGGATCCTTTGCATCCACAACAATTGATTCAGAATAATCGGAAAAGGAAGGGACCTACATCTTCAGGACCTGCAAACAGTACTGGAACAGGAAATACACTTGGCCCTTCTAATTCTCAGCCATCAACTCCATCGACTCATACTCCTGGTGATGGAGTTGCAATGACGGGTAACTTGCAGAATGTTGCTGGCGTATCCAAAGGCTTGATGATGTATGGTACTGATGGACCGGGTGGTCTTGCATCTTCCACAAATCAACTGGATGACATGGAACATTTTGGGGATGTTGGTTCCTTAGAGGATAATGTGGAATCATTTCTCTCACAGGATGATGGTGATGGAAGGGACTTGTTTGGCACGTTGAAACGGAACCCTTCTGAGCATGCTACAGATGCTTCGAAAGGCTTTTCCTTCAGTGAAGTTAGTTCTATCCGCAAAAGCAATAGCAAAGTTGTTTGCTGTCATTTCTCTTCAGATGGGAAATTATTGGCTAGTGCTGGACATGACAAAAAGGTTGTTCTGTGGAACATGGAGACACTGCAAACAGAGAGTACACCAGAGGAACACAGCCTTATTATTACTGATGTTCGCTTCAGACCGAATTCCACTCAGCTGGCAACATCTTCATTTGATACAACTGTTCGGTTGTGGGATGCTGCTGATCCAACCTTTTCTTTACAGGCATATAGTGGCCATACTTCACACGTGGTGTCCCTTGATTTTCACCCAAAGAAAAATGATCTTTTCTGTTCCTGTGATGATAACAATGAGATCCGTATCTGGAATATTAACCAATATTCTTGCAGCCGAGTTTTTAAGGGAGGATCAACCCAGGTGAGGTTTCAGCCAAGGGTTGGTCAACTTCTGGCTGCAGCAAGTGGGAGTCTAGTGTCTCTCTTTGATGTTGAGACTGATAGGCAGATGCACATGTTTCAGGGACACTCTGCAGACGTACATTGTGTCTGTTGGGATTCAAATGGAGATTACTTGGCTTCTGTGAGTCAAGAATCTGTCAAAGTGTGGTCACTTGCATCTGGGGAGTGCATTCATGAACTTAATTCCAGTGGAAACATGTATCATTCTTGTGTCTTTCACCCAAGCTACTCAACTCTCTTGGTTATTGGAGGATACCAGGTATGTGCCTATGAAGCTTTGTTGTTTGCTATTCATTGTCACTTCTTTTATTGTTTATTTGGTTTATATGTGTGA 2328 0.4347 MQSRIAVNFASERGIMAQSNWEADKMLDVYIYDYLVKKKLHNTAKAFMTEGKVSPDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSETAAAYLEAQQNKVKEQQQLQIQHMQLIRQAQLQRRDSNHPPLGGPVNAITTEGVLGQSTASALAAKMYEERMKHSNPMDTETSQPLLDPRMAILKSTNHPGQMVQGNSGSVTAALQQIQARTQQTPDIKGEVNMGAMQRSLPMDPSSIYGQGGMQSKTGIANTGLNAGVGSLTLKGWPLTGIDQIRPGFGAPVQKPLLQSANQFQLLPQPQQQQLLAQVQAQGNIGNSPVYGDMDPQRLRGLNRGSLNAKDGQSIANDGSIGSPMQSTSSKINMPQIQQSTSQQQQDPLHPQQLIQNNRKRKGPTSSGPANSTGTGNTLGPSNSQPSTPSTHTPGDGVAMTGNLQNVAGVSKGLMMYGTDGPGGLASSTNQLDDMEHFGDVGSLEDNVESFLSQDDGDGRDLFGTLKRNPSEHATDASKGFSFSEVSSIRKSNSKVVCCHFSSDGKLLASAGHDKKVVLWNMETLQTESTPEEHSLIITDVRFRPNSTQLATSSFDTTVRLWDAADPTFSLQAYSGHTSHVVSLDFHPKKNDLFCSCDDNNEIRIWNINQYSCSRVFKGGSTQVRFQPRVGQLLAAASGSLVSLFDVETDRQMHMFQGHSADVHCVCWDSNGDYLASVSQESVKVWSLASGECIHELNSSGNMYHSCVFHPSYSTLLVIGGYQVCAYEALLFAIHCHFFYCLFGLYV 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9408g00001 775 ProSiteProfiles LIS1 homology (LisH) motif profile. 23 55 IPR006594 GO:0005515
Vium9408g00001 775 MobiDBLite consensus disorder prediction 315 430 - -
Vium9408g00001 775 Pfam LisH 25 51 IPR006594 GO:0005515
Vium9408g00001 775 ProSiteProfiles Trp-Asp (WD) repeats profile. 517 558 IPR001680 GO:0005515
Vium9408g00001 775 MobiDBLite consensus disorder prediction 335 430 - -
Vium9408g00001 775 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 517 552 - -
Vium9408g00001 775 Pfam WD domain, G-beta repeat 680 715 IPR001680 GO:0005515
Vium9408g00001 775 Pfam WD domain, G-beta repeat 558 591 IPR001680 GO:0005515
Vium9408g00001 775 Pfam WD domain, G-beta repeat 522 549 IPR001680 GO:0005515
Vium9408g00001 775 Pfam WD domain, G-beta repeat 599 635 IPR001680 GO:0005515
Vium9408g00001 775 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 559 591 - -
Vium9408g00001 775 ProSiteProfiles Trp-Asp (WD) repeats profile. 684 724 IPR001680 GO:0005515
Vium9408g00001 775 Gene3D - 652 753 IPR015943 GO:0005515
Vium9408g00001 775 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 602 637 - -
Vium9408g00001 775 ProSitePatterns Glutamate 5-kinase signature. 235 252 IPR019797 GO:0004349|GO:0006561
Vium9408g00001 775 ProSitePatterns Trp-Asp (WD) repeats signature. 536 550 IPR019775 -
Vium9408g00001 775 ProSiteProfiles Trp-Asp (WD) repeats profile. 602 644 IPR001680 GO:0005515
Vium9408g00001 775 Gene3D - 493 651 IPR015943 GO:0005515
Vium9408g00001 775 CDD WD40 513 749 - -
Vium9408g00001 775 SUPERFAMILY WD40 repeat-like 511 748 IPR036322 GO:0005515
Vium9408g00001 775 SMART WD40_4 552 591 IPR001680 GO:0005515
Vium9408g00001 775 SMART WD40_4 718 756 IPR001680 GO:0005515
Vium9408g00001 775 SMART WD40_4 595 635 IPR001680 GO:0005515
Vium9408g00001 775 SMART WD40_4 638 674 IPR001680 GO:0005515
Vium9408g00001 775 SMART WD40_4 510 549 IPR001680 GO:0005515
Vium9408g00001 775 SMART WD40_4 677 715 IPR001680 GO:0005515
Vium9408g00001 775 ProSiteProfiles Trp-Asp (WD) repeats profile. 559 591 IPR001680 GO:0005515
Vium9408g00001 775 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 16 752 IPR044716 GO:0003714
Vium9408g00001 775 SMART Lish 23 55 IPR006594 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9408g00001 Vium-Chr9408 6932 30822 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9408g00001 511 716 U-box Gene Family AT2G33340 27.315 9.25e-15 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Vium9408g00001 WD40 3.2e-06 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9408g00001 - - var:108326218 1444.87