Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium939g00001 ATGAACCTTCTCTTCCCCTTCATCACTGTCGATGACGAATCATTTATAAGCGCTTCCTCTTTTCCTTCTTCACTTTATAAAATCTCATACCCTTTTTCTCTCTCTAAGGCGAGCCAAATGAAGAACTCAAATGGCTCTAGAGAAAATGGAGGAAGTTACGTTTTTCTCCTCCTCCTCCTTCTCTTCGTTCCTCTTGCGGCTGCACAATCTACAACCAATAACCAAAACGAATCGTATTACAACCGCTTCAGCCCTTCCATGGCCATCATAATCGTCATCCTCATCGCCGCCGTCTTCCTCATGGGCTTCTTCTCCATCTACATCCGCCACTGCGCCGACTCCCCCTCCGCAAGCATCCGCAACCTCACCGGAGCCACCTCCCGCCAGCGCCGTGGCCTCGATCAGGCCGTCATCGACACTTTCCCCACGCTGGATTACTCCGTGGTGAAGATCCACAAGCTTGGAAAGGGGACGCTGGAGTGCGCGGTGTGCTTAAACGAGTTCGAGGAAACCGAAACGCTGCGTTTGATCCCTAAGTGCGATCACGTGTTTCACCCGGAGTGCATCGACGAGTGGCTCGCCTCCCACACTACCTGCCCCGTTTGCCGCGCTAACCTCGTCCCCGAGCCCGGAGACTCCGTCAGAGGAATTCCGGTTCTCAATGCTCCTAACGACATCGAGGCCCAATCCGAAGCCCAACCCGAGGCCCACAACGACGCCGTCGAGCCTCTTCCCGAACAACAGCAAGAGCCTAAGCTTCCGATTTCCTCTGAACCCCCTCAAGTGCTCAGCCTAAACCAGACGCTGAACCGGAACCGCACGAGAGGCTCCCGGTCGGGCCGCCCCCGCCGGTTCCCCCGCTCTCACTCGACCGGTCATTCGCTGGTCCAACCCGGCGAGGACACTGAGAGGTACACCTTGAGGCTTCCTGAGGAAGTTAGAAAACAGCTACTTCTCAACCCGGAACTGCATCGAGCGAGAAGCTTGGTTATGTTGCCCAGGGAAGGTAGTTCGCGGCGTGGATATCGAACCGGCGAGGGAAGTAGCAGAGGGAGGTCTTCGCGGCGGTTGGACCGGGGGTTTAAGTCCGACCGCTGGGTTTTCACTATGGCGCCGCCTTTCTTAGTGAGGGCCTCTTCCGTTAGGTCTCCAAGGGTGGCCAATAACGGCGGCGCAGGAATATCTGCTACTGCGCCCTTTCCGCCGCCGGCTGCTGCGGATTCTGTTTGA 1230 0.5667 MNLLFPFITVDDESFISASSFPSSLYKISYPFSLSKASQMKNSNGSRENGGSYVFLLLLLLFVPLAAAQSTTNNQNESYYNRFSPSMAIIIVILIAAVFLMGFFSIYIRHCADSPSASIRNLTGATSRQRRGLDQAVIDTFPTLDYSVVKIHKLGKGTLECAVCLNEFEETETLRLIPKCDHVFHPECIDEWLASHTTCPVCRANLVPEPGDSVRGIPVLNAPNDIEAQSEAQPEAHNDAVEPLPEQQQEPKLPISSEPPQVLSLNQTLNRNRTRGSRSGRPRRFPRSHSTGHSLVQPGEDTERYTLRLPEEVRKQLLLNPELHRARSLVMLPREGSSRRGYRTGEGSSRGRSSRRLDRGFKSDRWVFTMAPPFLVRASSVRSPRVANNGGAGISATAPFPPPAAADSV 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium939g00001 409 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 120 208 IPR013083 -
Vium939g00001 409 MobiDBLite consensus disorder prediction 229 304 - -
Vium939g00001 409 MobiDBLite consensus disorder prediction 332 356 - -
Vium939g00001 409 FunFam E3 ubiquitin-protein ligase ATL6 121 209 - -
Vium939g00001 409 MobiDBLite consensus disorder prediction 385 409 - -
Vium939g00001 409 SUPERFAMILY RING/U-box 155 209 - -
Vium939g00001 409 CDD RING-H2_EL5-like 160 203 - -
Vium939g00001 409 PANTHER RING FINGER DOMAIN-CONTAINING 70 211 - -
Vium939g00001 409 SMART ring_2 161 202 IPR001841 -
Vium939g00001 409 MobiDBLite consensus disorder prediction 250 275 - -
Vium939g00001 409 ProSiteProfiles Zinc finger RING-type profile. 161 203 IPR001841 -
Vium939g00001 409 MobiDBLite consensus disorder prediction 339 356 - -
Vium939g00001 409 Pfam Ring finger domain 160 203 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium939g00001 Vium-Chr939 300 1875 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium939g00001 40 409 Rapid Response to Elicitors AT3G05200 45.093 4.08e-95 289
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium939g00001 K10664 - gmx:100810865 497.278