LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium9399g00001	ATGATAGCTTGGAGAGACAGTTATATAGGCACCCTTTCCACGATCACTTCCTTCCTAAACCCAAACACAAACCCACTCAACACCACTATATATTTTTTCATTCCACTTCATTCCCTCAACCACAACAACATGAGAAACCCTTCATCAACATCAACAACCAAGAACAAGAAGACTGGTGGTGGTAGTAATAGCACTACCACCAGCTACAATAGCAACAACAGCAACAACAATAACATTAGTAGCAGCAATAATAATGGTTCCAACACCAACACTCCATGCTGCAGTAAAGTTGGCTTGAAGAGAGGACCATGGACACCAGAAGAAGATGAGGTGTTAGCCAATTACATCAAGAAAGAAGGAGAAGGGCGTTGGAGAACGCTCCCCAAGCGTGCTGGCCTTCTCCGGTGCGGCAAAAGCTGCCGTCTCCGCTGGATGAACTACCTCCGCCCCTCCGTCAAACGCGGCCACATCGCCCCTGACGAGGAAGATCTCATCCTCCGCCTCCACCGCCTCCTTGGCAACCGGTGGTCTTTGATTGCTGGGAGGATTCCTGGAAGAACAGATAATGAAATAAAGAACTATTGGAACACCCATCTAAGTAAAAAGCTCATTAGCCAAGGGATTGATCCCAGAACTCACAAACCTCTCAACCCACCATCCATGAATATCAATATTCCTTCTTCTTCTACTCCTTCTACTACTTTTACAGTCACTCCACCCTCTATGCCTCCTCCAATGATCATCACCGGCCACAACCCTTGTCATGATCTCACTCTTGTTAATCAAGGAATTCATGCGATTCATCATTTGGGTCAACACCTCCAACCTCCCGTTTCAAACCCCTTTGATAATAACAACATTAGCAATCAAGTGGCTGCTGTCACAGATGATGTTTCTGCAATGGGGTTCATGGACAGTGAGGATTGCAACGATGATATCAACATCAATTATTACTCAGAAGATGTTTTTTCTTCCTTCCTCAACTCCTTGATCAACGAGGATGCTTTTGCGTCCCAGCAACACCACGTGCAAACAGAGCTCCCCAGTGAGCGTTGCATTCCACTGCCGTGTGATGATCGTGTGGATGATCCTCTGGTTTCAATAACAACTGCTTCCACATCGCAGGGTTACGATGATGACCTTGGGGTTCTCTGGGAATCGCCTCTCGTGCCTTCTACTACTTTCACCCATCACGTTAACGATCCCATCATCAAGATGGCTCATGATCACCATCACCACAATCAATAG	1248	0.4639	MIAWRDSYIGTLSTITSFLNPNTNPLNTTIYFFIPLHSLNHNNMRNPSSTSTTKNKKTGGGSNSTTTSYNSNNSNNNNISSSNNNGSNTNTPCCSKVGLKRGPWTPEEDEVLANYIKKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDPRTHKPLNPPSMNINIPSSSTPSTTFTVTPPSMPPPMIITGHNPCHDLTLVNQGIHAIHHLGQHLQPPVSNPFDNNNISNQVAAVTDDVSAMGFMDSEDCNDDININYYSEDVFSSFLNSLINEDAFASQQHHVQTELPSERCIPLPCDDRVDDPLVSITTASTSQGYDDDLGVLWESPLVPSTTFTHHVNDPIIKMAHDHHHHNQ	415

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium9399g00001	415	MobiDBLite	consensus disorder prediction	217	235	-	-
	Vium9399g00001	415	Gene3D	-	158	220	-	-
	Vium9399g00001	415	Pfam	Myb-like DNA-binding domain	101	148	IPR001005	-
	Vium9399g00001	415	Pfam	Myb-like DNA-binding domain	159	199	IPR001005	-
	Vium9399g00001	415	MobiDBLite	consensus disorder prediction	44	91	-	-
	Vium9399g00001	415	SMART	sant	100	150	IPR001005	-
	Vium9399g00001	415	SMART	sant	153	201	IPR001005	-
	Vium9399g00001	415	ProSiteProfiles	Myb-like domain profile.	149	199	IPR001005	-
	Vium9399g00001	415	Gene3D	-	98	154	-	-
	Vium9399g00001	415	SUPERFAMILY	Homeodomain-like	98	195	IPR009057	-
	Vium9399g00001	415	CDD	SANT	103	148	IPR001005	-
	Vium9399g00001	415	FunFam	transcription repressor MYB5-like	158	224	-	-
	Vium9399g00001	415	CDD	SANT	159	199	IPR001005	-
	Vium9399g00001	415	ProSiteProfiles	Myb-like domain profile.	96	148	IPR001005	-
	Vium9399g00001	415	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	96	148	IPR017930	-
	Vium9399g00001	415	PANTHER	TRANSCRIPTION FACTOR MYB8-RELATED-RELATED	91	221	-	-
	Vium9399g00001	415	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	149	203	IPR017930	-
	Vium9399g00001	415	MobiDBLite	consensus disorder prediction	208	235	-	-
	Vium9399g00001	415	FunFam	Myb transcription factor	98	154	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium9399g00001	Vium-Chr9399	1500	3596	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium9399g00001	87	333	MYB Transcription Factor Family	AT3G13540	54.217	2.24e-82	251

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Vium9399g00001		Myb_DNA-binding	3.3e-14	CL0123