Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9398g00003 ATGCTATCGCAGCTCCGCCATCTTCATCTGGTCTCCCTAATCGGATACTGCAACGAGATGAACGAGATGATACTGGTCTACGACTTCATGGCGCGCGGCACCCTACGCGACCATCTCTACAACACGGACAACCCCGCTATCTTGTGGAAGCAGCGCTTGCGGATCTGTATCGGCGCGGCGCGAGGGCTGCACTATCTCCACACAGGCGGGAAGCACACGATCATCCACCGCGACGTGAAAACAACGAACATCTTGTTAGATGATAAGTGGGTGGCGAAGGTTTCGGACTTCGGGCTTTCAAGAATCGGGCCAACAGGCACGGACAAGTCCCACGTGAGTACCCATGTGAAGGGAAGCTTTGGCTACATAGATCCCGAGTACTACAAACGATTTCGTCTAACGGAAAAGTCTGATGTTTACTCTTTCGGGGTTGTGCTGTTTGAGATACTGTGTGGTCGTCCAGCTTTGATTCACAGTGCAGAGACGCAGCAGGTATCGCTTTCTAACTGGGTGAGACATTGTGACCAAAATGGGACCATACCAGAGATTGTGGACCCCACGTTGAAGAAGAAGATTGCACCGGAGTGCCTGAAAACGTTTTGTCAGATTGGAATGAGTTGTTTGTTGGAAGATGGGACGAAGAGGCCTTCCATGAAGGACGTGGTTGCGATGTTGGAGTTTACGCTGCGGCTACAAGAAAGTGCAGAGCAACACTCGTCTGAAAAAGGAGAGGAAATTTGTGCGGATAGCTTTTCTACTACTGACATGTATTTCACTACTACGACTACCACCAGTGAAGATAATAACTATAGTAATAATACGGTGTCGTCTTGGACTCCTTTCTCCGAAATTATGGATCCAAAGCCGCGTTGA 873 0.4948 MLSQLRHLHLVSLIGYCNEMNEMILVYDFMARGTLRDHLYNTDNPAILWKQRLRICIGAARGLHYLHTGGKHTIIHRDVKTTNILLDDKWVAKVSDFGLSRIGPTGTDKSHVSTHVKGSFGYIDPEYYKRFRLTEKSDVYSFGVVLFEILCGRPALIHSAETQQVSLSNWVRHCDQNGTIPEIVDPTLKKKIAPECLKTFCQIGMSCLLEDGTKRPSMKDVVAMLEFTLRLQESAEQHSSEKGEEICADSFSTTDMYFTTTTTTSEDNNYSNNTVSSWTPFSEIMDPKPR 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9398g00003 290 SMART serkin_6 1 228 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9398g00003 290 ProSitePatterns Serine/Threonine protein kinases active-site signature. 74 86 IPR008271 GO:0004672|GO:0006468
Vium9398g00003 290 FunFam Receptor-like protein kinase FERONIA 30 246 - -
Vium9398g00003 290 Gene3D Phosphorylase Kinase; domain 1 1 30 - -
Vium9398g00003 290 ProSiteProfiles Protein kinase domain profile. 1 228 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9398g00003 290 SUPERFAMILY Protein kinase-like (PK-like) 2 228 IPR011009 -
Vium9398g00003 290 Pfam Protein tyrosine and serine/threonine kinase 1 225 IPR001245 GO:0004672|GO:0006468
Vium9398g00003 290 Gene3D Transferase(Phosphotransferase) domain 1 31 254 - -
Vium9398g00003 290 PANTHER OS07G0166700 PROTEIN 1 232 IPR045272 GO:0004714|GO:0006468
Vium9398g00003 290 PIRSF TyrPK_CSF1-R 191 287 - -
Vium9398g00003 290 PIRSF TyrPK_CSF1-R 13 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9398g00003 Vium-Chr9398 29522 30551 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9398g00003 1 249 Receptor kinase-like Gene Family AT3G51550 67.871 6.41e-118 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vium9398g00003 PK_Tyr_Ser-Thr 5e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9398g00003 - - var:108344516 546.969