Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9398g00002 ATGGGCAGGAGGGTATTCTTCTCCTTCTCGCTTCCTTGTTTCGTCTTTGTTGTGAGGGCAAGATCCAAGTCCAATCCATGGCCACTAAAGCTGCCAACCAACACGTTCATCCGACGCTTCTCCATCATCACGATCAAAGCCGCCACCAACAACTTCGACGACGCTTCCCTCGTCGGCTTCGGGGGATTCGGCCACGTGTACAGGGGCTTAATCCGCGGAATTTTCATCCCAGTGGCTCATAAGCACTTAATACAGGGTTCGAATGGCGCTGAAAAGTTCTCGAAGGTGGCTATCAAGCGCCACAAACCGGGTTCAAAGCAGGGCGTTGAAGAATTTCTGAACGAGATCAAAATGCTCTCGCAGCTCCGCCATCGCAATCTCGTTCGACTCATCGGTTACTGCAAAACCGAGAAGGAGATGATCTTGGTCTATAAATTCATGGCACGTGGCAACCTCCGTGACCATCTCTACAACAGCGACAAACCTTCCTTGCCATGGAAGCGACGCTTGCAGATCTGTATCGACGTTGCGCACGCGCTGCATTATCTTCACTGCTGCGCCAATAAATTCTCGATAATCCACAGCGATGTGAAAACCACGAACATCTTGTTGGACGAGGAGTGGGTGGCCAAGGTATCGGACTTTGGACTTTCCAAAATTGGGCCCATGGGAGAGTCGAAGGTCAATGTCTGCTCCACCGCTGTGAAGGGTAGCTTTGGATATATAGATCCAGAATATCATATACGACAACATTTGACGGAAAAGTCTGACGTGTACTCTTTCGGGGTAGTGTTATTCGAGGTACTGTGCGCTCGCCCGCCTCTCATTCGCACGACGGATCCGAGACAAGAATCACTCGGTAATTGGGTTAGGTACTGTTACGAAAATGGAACCATGGCAGAGATAATGGACCCCACGTTGAGTGGAAAGATTGCGCCTAATTGCTTTAGAATGTTTTGCGATACTGGGGTGAGTTGTTTATCAGAAATTGGGACGCAGAGACCGTCTATGAACGACGTCGTTCAGATGCTAGGGTATGCCCTACTACTACAAGAAAAGGCAGAAATTAGTGCGGCACATTCTAGTGACAAAATTTCATTTTTCTAG 1107 0.4896 MGRRVFFSFSLPCFVFVVRARSKSNPWPLKLPTNTFIRRFSIITIKAATNNFDDASLVGFGGFGHVYRGLIRGIFIPVAHKHLIQGSNGAEKFSKVAIKRHKPGSKQGVEEFLNEIKMLSQLRHRNLVRLIGYCKTEKEMILVYKFMARGNLRDHLYNSDKPSLPWKRRLQICIDVAHALHYLHCCANKFSIIHSDVKTTNILLDEEWVAKVSDFGLSKIGPMGESKVNVCSTAVKGSFGYIDPEYHIRQHLTEKSDVYSFGVVLFEVLCARPPLIRTTDPRQESLGNWVRYCYENGTMAEIMDPTLSGKIAPNCFRMFCDTGVSCLSEIGTQRPSMNDVVQMLGYALLLQEKAEISAAHSSDKISFF 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9398g00002 368 SUPERFAMILY Protein kinase-like (PK-like) 26 344 IPR011009 -
Vium9398g00002 368 PANTHER OS07G0166700 PROTEIN 37 351 IPR045272 GO:0004714|GO:0006468
Vium9398g00002 368 Gene3D Transferase(Phosphotransferase) domain 1 147 365 - -
Vium9398g00002 368 SMART serkin_6 52 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9398g00002 368 ProSiteProfiles Protein kinase domain profile. 52 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9398g00002 368 Pfam Protein tyrosine and serine/threonine kinase 58 344 IPR001245 GO:0004672|GO:0006468
Vium9398g00002 368 Gene3D Phosphorylase Kinase; domain 1 17 146 - -
Vium9398g00002 368 ProSitePatterns Serine/Threonine protein kinases active-site signature. 192 204 IPR008271 GO:0004672|GO:0006468
Vium9398g00002 368 FunFam Receptor-like protein kinase FERONIA 147 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9398g00002 Vium-Chr9398 23051 24670 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9398g00002 31 355 Receptor kinase-like Gene Family AT3G51550 57.846 1.29e-119 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vium9398g00002 PK_Tyr_Ser-Thr 9.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9398g00002 - - vun:114181146 574.704