Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9397g00001 ATGGAGATTGTAGGAATGGGTTTTCGTCCCACAGATGAAGAACTTGTCGACTTCTACCTCAAACACAAGTTGCTCGATGATGATCCCCTTGTCCATGTCTTGACTGACATAGATCTTTCCGATGTGGATCCTTGGGAAATACCAGAGATGTTAGCAAAATCAGTAATACCATTCAAAGACTCAAAATGGTTTTTCTTCAGTCCTGTTAATTTGAAGTACTCAAATAGTAAAAGGTTTAAAAGGACAACAAAGAGTGGGTTCTGGAAACCAACGGGAAAACCCCGTGATGTTAGAAAAGGGGACACCAACACTGGCATTGGGACCAAGAAGACTCTTGTTTTCCAGAGTGGTCATGTTTCCAAAGGTGTCACTGTCAATTCCAACTGGGTTATTCACGAATATCATGCTCTTAACTTTCTCCATATCCAGGTTTGTATTTCATTTTTTTATAAACTTGTAACTCTGCTTGGAAATAATCTCTGTCCTAAACTACAGTGTGTAGGAGTGTAA 510 0.3961 MEIVGMGFRPTDEELVDFYLKHKLLDDDPLVHVLTDIDLSDVDPWEIPEMLAKSVIPFKDSKWFFFSPVNLKYSNSKRFKRTTKSGFWKPTGKPRDVRKGDTNTGIGTKKTLVFQSGHVSKGVTVNSNWVIHEYHALNFLHIQVCISFFYKLVTLLGNNLCPKLQCVGV 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9397g00001 169 Gene3D NAC domain 11 144 IPR036093 GO:0003677|GO:0006355
Vium9397g00001 169 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 5 136 - -
Vium9397g00001 169 ProSiteProfiles NAC domain profile. 2 151 IPR003441 GO:0003677|GO:0006355
Vium9397g00001 169 SUPERFAMILY NAC domain 4 138 IPR036093 GO:0003677|GO:0006355
Vium9397g00001 169 Pfam No apical meristem (NAM) protein 4 135 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9397g00001 Vium-Chr9397 14857 15751 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9397g00001 4 136 NAC Transcription Factor Family AT3G49530 45.113 4.71e-35 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium9397g00001 NAM 1.9e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9397g00001 - - vum:124848415 356.295