Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium938g00004 ATGAAACATCTTCGAAGTTACTATAACTCAGAAGCTCAAATGATAAGAGGTGGGTTTCCTCAGCCATTCATCTCTAGGACATACCAAACCAGTTTCTTGAAGCAAAGATCAAAGACAGAGATAAAAGTTGTAGCCGCAAAGAAACACAGTGAAGCTGAAAAGAGACGTAGAATGAGAATCAATGGTCAATATGAAACCCTCCGAACTATCCTTCCCAACTTGATCAAAAAGGACAAGGCATCGGTGTTGGCAGAGACTATCAAGCAAGTGAAGGAGCTGAAGAAAAAAGTATCAAAAGTGGAACAAGAGAGTTGTGGTAGCTCATCAAAGGATGTTGTTAAGTTTCCTAGTGGGGCAGACAGGTTGAGGTTGGAAAAATGTAATAATGAGGAGGACCTAGTGAAGGCCACATTGAGTTGCGAGGATAGTATGGGATTGATGTCTGCAATATCAAGGGCAATGGGATCAGTGAAAACCAAAGTGGTGAAGGCTGAGATAGTGAGTGTGGGAGGGAGAAACAGAAGTGTGTTGTGGGTGCAAGGTCTTGGGAATGATCGTATGGGGATGCTCAAGAGCTCTTTGAAGATTGCCATGCACAAGCCAGCCTTTAAGATGCGCCGTTCTACTCACTAA 633 0.4329 MKHLRSYYNSEAQMIRGGFPQPFISRTYQTSFLKQRSKTEIKVVAAKKHSEAEKRRRMRINGQYETLRTILPNLIKKDKASVLAETIKQVKELKKKVSKVEQESCGSSSKDVVKFPSGADRLRLEKCNNEEDLVKATLSCEDSMGLMSAISRAMGSVKTKVVKAEIVSVGGRNRSVLWVQGLGNDRMGMLKSSLKIAMHKPAFKMRRSTH 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium938g00004 210 Coils Coil 83 103 - -
Vium938g00004 210 PANTHER TRANSCRIPTION FACTOR BHLH30 33 202 IPR045847 GO:0003700|GO:0006355
Vium938g00004 210 SMART finulus 50 99 IPR011598 GO:0046983
Vium938g00004 210 Gene3D - 44 112 IPR036638 GO:0046983
Vium938g00004 210 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 47 103 IPR036638 GO:0046983
Vium938g00004 210 Pfam Helix-loop-helix DNA-binding domain 48 93 IPR011598 GO:0046983
Vium938g00004 210 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 44 93 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium938g00004 Vium-Chr938 80394 81310 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium938g00004 43 179 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G25710 39.286 9.13e-25 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium938g00004 HLH 2.9e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium938g00004 - - gmx:102667782 301.212