Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9389g00005 ATGACAACAGCAGAAGAAACTTCAAACTTGGATCTCATACGCCAACATCTCTTGGGAGAAAACATCTCAACCTCCTTTTTCTCCAATTTCTCCAACCTTGTGAAGCTTGAAGCCCCCTCATCAGCAGAGTTTGATTTAAGCTCATATATCTCAGACAACACCAGCTTCTTCACTTTCCTTGAAGGCTATGACTTGGTGGCAGACATGGAGTTTGTTGATCAGAAGCCCATCATGAACTCCACATCAACACCAACCATCTCCATCCCCTTAAACAAATGCAATTCTCCTGAACCATTGGCATCATCGGAATCACAAGAGAAGGCAAAGAAAGCAGAATACGATGTAGCAAAACGTTATAGAGGAGTTAGGAGAAGGCCCTGGGGTAAGTTTGCTGCTGAAATCCGTGACCCTACAAGGAAAGGTACAAGGGTTTGGCTTGGCACTTTCGACAGTGAAATCGATGCTGCTAAGGCCTATGATTGTGCTGCTTTCAAGATGAGAGGTCAGAAGGCCATTCTCAACTTCCCTCTTGAGGCTGGAGAGTATGATCCAAAACCAAACACTTGTGGCAGGAAAAGAAGAAGAGAGAGCCTTCAATTGGAGCTGCCACAGGTCCATCTTCATCATGGTGTGTCATGA 639 0.4507 MTTAEETSNLDLIRQHLLGENISTSFFSNFSNLVKLEAPSSAEFDLSSYISDNTSFFTFLEGYDLVADMEFVDQKPIMNSTSTPTISIPLNKCNSPEPLASSESQEKAKKAEYDVAKRYRGVRRRPWGKFAAEIRDPTRKGTRVWLGTFDSEIDAAKAYDCAAFKMRGQKAILNFPLEAGEYDPKPNTCGRKRRRESLQLELPQVHLHHGVS 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9389g00005 212 PANTHER DNA-BINDING DOMAIN 87 186 IPR044808 GO:0003700|GO:0009873
Vium9389g00005 212 FunFam Ethylene-responsive transcription factor 2 117 178 - -
Vium9389g00005 212 Pfam AP2 domain 118 168 IPR001471 GO:0003700|GO:0006355
Vium9389g00005 212 ProSiteProfiles AP2/ERF domain profile. 118 176 IPR001471 GO:0003700|GO:0006355
Vium9389g00005 212 PRINTS Ethylene responsive element binding protein signature 119 130 IPR001471 GO:0003700|GO:0006355
Vium9389g00005 212 PRINTS Ethylene responsive element binding protein signature 158 178 IPR001471 GO:0003700|GO:0006355
Vium9389g00005 212 SUPERFAMILY DNA-binding domain 118 177 IPR016177 GO:0003677
Vium9389g00005 212 CDD AP2 117 176 IPR001471 GO:0003700|GO:0006355
Vium9389g00005 212 SMART rav1_2 118 182 IPR001471 GO:0003700|GO:0006355
Vium9389g00005 212 Gene3D AP2/ERF domain 117 178 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9389g00005 Vium-Chr9389 31935 32975 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9389g00005 1 202 AP2-EREBP Transcription Factor Family AT5G07580 40.553 9.24e-43 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vium9389g00005 AP2 1.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9389g00005 - - gmx:100305726 306.605