Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9389g00001 GCCTACATTGTGTATATGGGCGATCATTCCAACGGCGAATCCAAGGAATACGTTCACATCAGTATGCTTCAAAATATCCTCGGCAGCAAATTTGCAGCAGATGCTTTGCTACACAGCTACAAGAAGAGTTTTAATGGTTTTGTTGCAAAGCTAACAGAAGAGGAAGCAGTGAAAATGGGAGGATTGGATGGTGTTGTTTCTGTTCTCCAAAACAAAAAGAATGAGCTGCATACAACAAGGTCTTGGGATTTCGTAGGTTTATCTCAGTCTGCGAAGAGAACAAGCAAAGAGAGTGACATAATTGTCGGAGTAATAGATACTGGAATTTGGCCAGAATCTGATAGTTTTAATGACCAAGGATTTCGTCCACCTCCACGAAAATGGAAGGGCACTTGCCATAACTTCACTTGCAATAATAAAATAATTGGCGCAAAATATTTTCACATGGAGGGTTCGTATGAAAAAGATGAGTTGATATCTCCAAGGGATTCAGATGGGCATGGCACTCATTGTGCATCCACTGCTGCAGGAAATTCAGTTGAGTTCGCAAGTTTCTTTGGCCTTGCATCAGGAACAGCAAGAGGAGGAGTTCCATCAGCACGCATTGCTGTGTACAAGCCTTGTTGGTCATCTGGTTGTGACGATGCAGACATCCTTCAAGCATTTGATGAAGCCATTGAAGATGGTGTTGACATCATTTCCATTTCATTAGGACCAAGAATCGTAGAACACAACGACTATTTCAATGATATATATGCGATAGGGAGTTTCCATGCTATGAAGAAAGGCATATTAACATCCACTTCAGCTGGTAACACAGGTCCAGAGTTTTATACAATATCTAAAAATGCACCGTGGACACTTTCTGTAGCAGCTAGCACTATAGACAGAAAGTTTTTTACCAGTGTTCAGTTGGGTGATGGCACAGTTTATCAGGGAGTTTCAATCAATTCATTTGATATGAAAAACGAGAGCTTTCCATTAATTTATGCTGGAAATGCACCAAACATCAATGGTGGATACAATAGTTCCATATCAAGGTTTTGCATCCAACATTCCTTAGACGAGAATTTGGTGAAGGGGAAAATTGTTTTGTGTGATGGTCTTCAAGAATCTTCATCTCTGGGATTGGTGTCTGGAGCAGCTGGTGTTTTACTGAGAAGTGCAGTGCCAGAAGATGTGACTTCTATCTATGCATTGCCAACAGTTCAACTTGGCCTTAGAAACGGGGCACTCGTACATTCTTACATAAATCTAACAAGTAATCCCACTGCTACTATATTTAAGAGTAATGAAGGTAAAGACTCAGTAGCCCCTTACATAGCTTCATTCTCATCTAGAGGACCAAATGCAATCACTCCAAACATTCTAAAGCCTGATTTAGCTGCTCCAGGGGTTGAGATTTTAGCTGCATGGTCTCCAATTTCTCCTGTTTCTGATGTAAGAGGAGATAACAGAGTTGCAAACTATAGTGTAGTGTCTGGAACTTCAATGGCATGCCCTCATGCTACTGCAGCAGCAGCTTATGTCAAATCATTTCATCCTTATTGGTCACCTGCAGCAATCAAATCAGCACTTATGACCACTGCTACCCCAATGAGTGCATTACTCAATCCTGAAGCTGAATTTGCTTATGGTGCTGGCCAAATCAACCCTATGAAGGCACTGAATCCTGGATTAGTTTATGATGCAAATGAAACTGATTACGTTAACTTTCTATGCGGTCAGGGATATAATACCAAAAGACTACGAACTATTACAAAAGATGATAGTAGTTGTACACAACAACCGAATAATGGAATGGTTTGGGATCTTAATCTCCCATCTTTTGCTCTTTCCATCAACACTTCAACACCTTTCAGTAGAACTTTTCATAGAACAGTTACCAATGTTGGAGCCAACACATCAACGTATAAAGCTAGACTAAGTGTAGTTGCAGCTTTATTGAAGGTGAAAGTGGAGCCAGATGTTATTTCCTTCTCATATGTGGGTCAAAAGAAATCCTTCACTCTTGTGATTGAAGGGACACTTAATGTGGAGACAGTTTCGTCTTCTTTGATTTGGGATGATGGAACTTTTCAAGTTAGAAGTCCTATTGTTGTTTTCCATCCATAA 2115 0.4038 AYIVYMGDHSNGESKEYVHISMLQNILGSKFAADALLHSYKKSFNGFVAKLTEEEAVKMGGLDGVVSVLQNKKNELHTTRSWDFVGLSQSAKRTSKESDIIVGVIDTGIWPESDSFNDQGFRPPPRKWKGTCHNFTCNNKIIGAKYFHMEGSYEKDELISPRDSDGHGTHCASTAAGNSVEFASFFGLASGTARGGVPSARIAVYKPCWSSGCDDADILQAFDEAIEDGVDIISISLGPRIVEHNDYFNDIYAIGSFHAMKKGILTSTSAGNTGPEFYTISKNAPWTLSVAASTIDRKFFTSVQLGDGTVYQGVSINSFDMKNESFPLIYAGNAPNINGGYNSSISRFCIQHSLDENLVKGKIVLCDGLQESSSLGLVSGAAGVLLRSAVPEDVTSIYALPTVQLGLRNGALVHSYINLTSNPTATIFKSNEGKDSVAPYIASFSSRGPNAITPNILKPDLAAPGVEILAAWSPISPVSDVRGDNRVANYSVVSGTSMACPHATAAAAYVKSFHPYWSPAAIKSALMTTATPMSALLNPEAEFAYGAGQINPMKALNPGLVYDANETDYVNFLCGQGYNTKRLRTITKDDSSCTQQPNNGMVWDLNLPSFALSINTSTPFSRTFHRTVTNVGANTSTYKARLSVVAALLKVKVEPDVISFSYVGQKKSFTLVIEGTLNVETVSSSLIWDDGTFQVRSPIVVFHP 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9389g00001 704 Pfam Subtilase family 98 548 IPR000209 GO:0006508|GO:0008236
Vium9389g00001 704 Gene3D Peptidase S8/S53 domain 99 569 IPR036852 GO:0004252|GO:0006508
Vium9389g00001 704 FunFam Subtilisin-like protease SBT1.5 99 306 - -
Vium9389g00001 704 Gene3D - 573 702 - -
Vium9389g00001 704 ProSitePatterns Serine proteases, subtilase family, serine active site. 495 505 IPR023828 -
Vium9389g00001 704 CDD Peptidases_S8_3 75 531 IPR034197 -
Vium9389g00001 704 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 2 701 IPR045051 -
Vium9389g00001 704 Pfam Fibronectin type-III domain 604 701 IPR041469 -
Vium9389g00001 704 CDD PA_subtilisin_like 302 427 - -
Vium9389g00001 704 ProSiteProfiles Serine proteases, subtilase domain profile. 81 556 - -
Vium9389g00001 704 Pfam Peptidase inhibitor I9 2 77 IPR010259 -
Vium9389g00001 704 SUPERFAMILY Subtilisin-like 76 560 IPR036852 GO:0004252|GO:0006508
Vium9389g00001 704 ProSitePatterns Serine proteases, subtilase family, histidine active site. 167 177 IPR022398 -
Vium9389g00001 704 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 1 77 IPR037045 -
Vium9389g00001 704 Gene3D - 296 434 - -
Vium9389g00001 704 PRINTS Subtilisin serine protease family (S8) signature 494 510 IPR015500 -
Vium9389g00001 704 PRINTS Subtilisin serine protease family (S8) signature 97 116 IPR015500 -
Vium9389g00001 704 PRINTS Subtilisin serine protease family (S8) signature 163 176 IPR015500 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9389g00001 Vium-Chr9389 5563 10697 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9389g00001 2 702 Subtilisin-like Serine Gene Family AT5G59100 48.266 0.0 645
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9389g00001 - - gmx:100800042 1135.17