Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9381g00003 ATGTTCAAGGTTATAGAAAACATGGAGAGGGGTTCAGAAAGGTGCTTAGATTCTCAACTGTGGCATGCCTGTGCTGGTGCCATGGTTCAAATGCCACCTCTTAACACAAAAGTCTTCTACTTTCCCCAGGGCCACGCGGAGCACGCTAATGGGAAAGTAGATTTTGGCCAAACCAGGGTTCCACCACTCGTCCCTTGCAGACTCTCTGCCATGAAATACATGGCAGACCCTGACACAGATGAGGTGTATGTCAAAATGAGGCTGATCCCTTTGAGGGAACATGAATTGGATTTGGAGGATGATTGTTTCTTGGGGAACACTGTGGAGGGTCAAGAGAAACCTCCTACCTCTTTTGCCAAGACACTCACACAATCTGATGCCAACAATGGTGGAGGGTTTTCTGTGCCTCGTTACTGTGCAGAAACCATCTTCCCGAGGTTGGACTATTCAGCCGAGCCTCCAGTTCAGACAATCATCGCCAAGGATATGCATGGACAGTGCTGGAAGTTTAGGCATATCTATAGAGGGACGCCTAGGAGGCATCTTTTGACCACTGGATGGAGCAATTTTGTGAATCAGAAGAGGCTTGTTGCTGGGGACTCCATTGTGTTTCTGAGGGCAGAAAACGGGGATCTTTGTGTTGGGATAAGGAGGGCTAAGAAGGGGATTGGTGGAGGGTCTGAGTTCTCTTCCGGATGGAACCCTCTCTTTGGTGGGGGTTCTGGATTCTTGTGTGGGAGTGAGAGCAACTTGGTGGGTGGTGCAAAAGGCGGTGGTGACGAGATGGTAGGAAGAGTGGCTGCTGAATCTGTTGTTGAGGCCGTAGCTTGTGCTGTTAATGGTAGGCCCTTCGAGGTTGTGTACTATCCAAGAGCTAGTTCCCCTGAGTTTTGTGTCAAGGCTTCTGTTGTGAAGGCTGCAATGCAAATTCAGTGGTGTTCTGGGATGAGATTCAAAATGCCCTTCGAAACTGAGGATTCTTCTAGGATTAGCTGGTTCATGGGCACCATTTCTTCTGTTCAGGTTGCAGATCCCATTCGTTGGCCTGATTCTCCTTGGCGTCTTCTGCAGGTGGTATGGGATGAACCAGATTTACTTCAGAATGTGAAGTGTGTAAACCCTTGGCTGGTTGAACTAGTCTCTAACATGCCCACCTTCAATCTCTCTGCATACTCACCTCCTAGAAAGAAACAACGCTTCCTGCATGACCCATATTTTCAAGTCATCAACCAACTCCCAATGCCATCATTTTCTAGCAATCTTCTGAATTATACCAACTCTCTTTGTAACATTGAAAATAATAGTTCTGCAGGCATACAGGGAGCCAGGCATGCTCAATTTGGACTATCTCCATCTGATTTTCCCTTCAACAAGCTCCCAACAGACATGCTTCTAGGTGGGTTCTCTAGGCTCGACCATGCAACAAAACCTGTTAGGCCTCCTTGCGGAACCTATAAAAACAGCACTTCTAATACTACTACTAAGACCAATGTTGACATATCTTGCCTGTTGACTGTGGGAAATCCCATCCCGAATTTTAAGGAATCGAATGCAACAAAAGCACCCCACATCTTGTTATTTGGAAAACTTATTCACACTGAGCAAAAGAGTTCAAACACCAGCTCTGCAAGTACAACTGGGAATAGTGTGTCTGAGGGGAATTCACTCAAGACATCTAATGCTTCTGATGGCCTAGGTTCTGCTTTGCACCAAAATAGCCCAATTGAGAATAATTCTGATGGAGGGTCTCCCTGGTACAAGGATCAGCACAAGGCTGATCTGGGATCCGACAACGTTAACACGTTATGCATTGCTTTGTAA 1821 0.4662 MFKVIENMERGSERCLDSQLWHACAGAMVQMPPLNTKVFYFPQGHAEHANGKVDFGQTRVPPLVPCRLSAMKYMADPDTDEVYVKMRLIPLREHELDLEDDCFLGNTVEGQEKPPTSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTIIAKDMHGQCWKFRHIYRGTPRRHLLTTGWSNFVNQKRLVAGDSIVFLRAENGDLCVGIRRAKKGIGGGSEFSSGWNPLFGGGSGFLCGSESNLVGGAKGGGDEMVGRVAAESVVEAVACAVNGRPFEVVYYPRASSPEFCVKASVVKAAMQIQWCSGMRFKMPFETEDSSRISWFMGTISSVQVADPIRWPDSPWRLLQVVWDEPDLLQNVKCVNPWLVELVSNMPTFNLSAYSPPRKKQRFLHDPYFQVINQLPMPSFSSNLLNYTNSLCNIENNSSAGIQGARHAQFGLSPSDFPFNKLPTDMLLGGFSRLDHATKPVRPPCGTYKNSTSNTTTKTNVDISCLLTVGNPIPNFKESNATKAPHILLFGKLIHTEQKSSNTSSASTTGNSVSEGNSLKTSNASDGLGSALHQNSPIENNSDGGSPWYKDQHKADLGSDNVNTLCIAL 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9381g00003 606 ProSiteProfiles B3 DNA-binding domain profile. 118 220 IPR003340 GO:0003677
Vium9381g00003 606 Gene3D - 312 385 - -
Vium9381g00003 606 CDD B3_DNA 117 218 IPR003340 GO:0003677
Vium9381g00003 606 MobiDBLite consensus disorder prediction 537 591 - -
Vium9381g00003 606 SMART B3_2 118 220 IPR003340 GO:0003677
Vium9381g00003 606 SUPERFAMILY DNA-binding pseudobarrel domain 107 219 IPR015300 -
Vium9381g00003 606 FunFam Auxin response factor 312 385 - -
Vium9381g00003 606 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 13 561 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vium9381g00003 606 MobiDBLite consensus disorder prediction 537 584 - -
Vium9381g00003 606 Pfam Auxin response factor 275 357 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vium9381g00003 606 FunFam Auxin response factor 116 220 - -
Vium9381g00003 606 Pfam B3 DNA binding domain 118 219 IPR003340 GO:0003677
Vium9381g00003 606 Gene3D - 116 220 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9381g00003 Vium-Chr9381 30310 33551 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9381g00003 1 592 B3 DNA Binding Superfamily AT4G30080 56.623 0.0 626
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vium9381g00003 B3 2.6e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9381g00003 - - ccaj:109810654 1099.35