Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9381g00002 ATGGTTGGACCTAACTTCATGGATGAGATAGACTGCGGTAGCTTCTTTGACCACATCGACGACCTTCTCGATTTTCCTGTGGAGGAAGTTGAGGGAATCACCCCATCCTTGCCCGCCGCCGCCGCCGCCGGAAACTGCAACTCGTTGGCAAGCATCTGGCCCGCCGGGGCGGATTCGTTTCCCGGTTCTGACTCGGTGTTCTCCGGCAACAGCGCTTCGGACCTCTCCGCCGAGCTCTCAGTTCCGTATGAAGACATTGTGCAATTGGAATGGCTGTCGAACTTTGTGGAGGATTCGTTTTGTGGGGGGAGCTTGACCATGAAAAAAGTGGAAGAGCCATCGTGCATCACAAAGGAGGACTCAGTGCACAACCAATTCCACACATCAAGCCCAGTTTCTGTCCTTGAGAGCAGCAGTTCCTGCTCCGGGGGAAAGACGGTGCCGGCGCCGCCACGAAGCCCGGAGGTTTACATCCCTGTGCCATGTGGACGCGCACGCAGCAAGCGTCCACGTCCTGCCACCTTCAATCCTCGGCCAGCCATGAACCTCATTTCCCCTGCCTCGTCCTTTGTCGGGGAGAACATACAACCAAATGTAATTTCGCCGAAGACCTCTTCAGACTCTGAGAATTTTGCCGAGTCTCAACTTGTAGCAAAGATGCCAAAGCAAGTGTGTGGGGAGCCTAAGAAAAAGAAGAAAGTGAAGGTGACAGTTCCTGCAGGTGGCGGTGATAGCAATCAGAATGGATTGCAAGCGGTTAGGAAATGCATGCATTGTGAAATAACGAAGACACCACAGTGGAGAGCAGGGCCAATGGGGCCAAAAACACTGTGCAATGCATGTGGTGTTCGTTTCAAGTCTGGGAGGCTCTACCCGGAGTATCGCCCAGCTGCAAGCCCAACCTTTTGTCCATCTTTGCACTCGAATTCCCACAAGAAGGTGCTGGAAATGAGATGCAGGGGCATTGAGAAATCTGGTTTTGCGATGAATAATGCAGCTGCCTCTCCCGAACTCATTCCAAACACTAACAGCAGCCTTAGCCTGGAGTACATTTGA 1056 0.5294 MVGPNFMDEIDCGSFFDHIDDLLDFPVEEVEGITPSLPAAAAAGNCNSLASIWPAGADSFPGSDSVFSGNSASDLSAELSVPYEDIVQLEWLSNFVEDSFCGGSLTMKKVEEPSCITKEDSVHNQFHTSSPVSVLESSSSCSGGKTVPAPPRSPEVYIPVPCGRARSKRPRPATFNPRPAMNLISPASSFVGENIQPNVISPKTSSDSENFAESQLVAKMPKQVCGEPKKKKKVKVTVPAGGGDSNQNGLQAVRKCMHCEITKTPQWRAGPMGPKTLCNACGVRFKSGRLYPEYRPAASPTFCPSLHSNSHKKVLEMRCRGIEKSGFAMNNAAASPELIPNTNSSLSLEYI 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9381g00002 351 Pfam GATA zinc finger 256 289 IPR000679 GO:0006355|GO:0043565
Vium9381g00002 351 PANTHER GATA TRANSCRIPTION FACTOR 15 332 - -
Vium9381g00002 351 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 254 313 - -
Vium9381g00002 351 CDD ZnF_GATA 255 302 IPR000679 GO:0006355|GO:0043565
Vium9381g00002 351 SMART GATA_3 250 300 IPR000679 GO:0006355|GO:0043565
Vium9381g00002 351 PIRSF Txn_fac_GATA_plant 3 344 IPR016679 GO:0003677|GO:0005634|GO:0045893
Vium9381g00002 351 MobiDBLite consensus disorder prediction 161 180 - -
Vium9381g00002 351 ProSiteProfiles GATA-type zinc finger domain profile. 250 286 IPR000679 GO:0006355|GO:0043565
Vium9381g00002 351 ProSitePatterns GATA-type zinc finger domain. 256 281 IPR000679 GO:0006355|GO:0043565
Vium9381g00002 351 Gene3D - 251 300 IPR013088 GO:0006355|GO:0008270
Vium9381g00002 351 FunFam GATA transcription factor 245 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9381g00002 Vium-Chr9381 2935 6322 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9381g00002 19 318 C2C2-Gata Transcription Factor Family AT4G32890 35.714 3.63e-43 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vium9381g00002 GATA 1.2e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9381g00002 - - gmx:100816641 587.03