Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9375g00004 ATGGCTAATTTTGAGAGAGACGAGGTGGCAATTCTATCAGATTGTCATCCTCAAGCATCAGTTGAAGTCCTTGATTCTGGATTCCCAAGGCATGTATCTAGGACTCGAAGTGTATCAATTTCTATTCCCGCGACACTCACAGAGCCATATGAAAGAGATACTAATCTTGTGGGATACACTGGTCCCCTACGGATTCAGAGAATAACTCAGATGAGTGGTCCATTACATGTTACTAATAGACCTGGAAACCTTTTTCGGCAGAATAAAGTGGTACCCCAGTCACAAGCAGAAGAAAGTAAGACAGAAAATTTTTCTTCATGCTGTGGCATCATGGGTGAAAATGATTTGCAGAACTATGCTTGCAAGAATGAACATTTAGTCAGGTCCGGTCCACTGGGAATGTGTATTGATCCATATTGTACAACGTGCCCAACTTACTTCAAGGCTATTCAGAAAAGTAGTTCAAATGCTTCGGGTATATTTAATCATGAGTTTCGGAATACTCTTTACGACGATGCCAAGAATTGGGCGAGAAGACTTTTTACTTTCTTGATTCCCCATGTTCCTAGAGTTATCAATCCTCATAATAAACTTGTACAACAATGGAAACAATTTTTTGTAATATGTTGCTTGGTGGCAATTTTTGTGGATCCGTTATTCTTCTTCTTGCTCTCTGTGCAGAAGAATAATAAGTGTATTGTTATAGACTGGGCTTTTACAAAACTTCTTGTTGCACTTAGAAGCATGAATGATTTCATTCACTTCCTAAACATTGTTCTTCAGTTTAGGTTGGCTTATGTGGCTCCTGAGTCTAGGGTGGTTGGTGCTGGGGAGTTAGTTGACCATCCAAAGAAAATAGCTCTTCATTACTTTAAGACATCTTTTTTCATTGACTTATTTGTTGTTCTTCCACTTCCTCAGATATTCATATTGTTTGTCCTACCAACACACTTAGGGACAGGGTCAACAGGAGCAAACTATGCAAATAACCTTTTGCGCATTGTGATCCTCGTCCAGCATATCCCTAGACTATGTAGATTTCTTCCTATGATATTTTCTCCAGCTGGATTCGTATTTGAGTCTCCGTGGGCAAATTTCTTTATAAATCTTTCTACCTTTGTACTGTCTGGACATGTTGTTGGATCCTGGTGGTACCTCTTCAGTTTACAGAGGGTTAATCAGTGTCTACGAGAGGCCTGTGATACCACACATATTACAGGATGCACAAAATTCATTGATTGTGGACATGGAATAACTGAAGCATATCAACATAACAATAGTTGGCATAATTGGAGGAACAATACTTTTGCAAATGCTTGTTTTACTGAAGATGGTTTTCGTGATGGTTATGGCATCTTTATTAAAGCTGTCAACCTTACCGCACATCCTAATTTATCTACTAGATATTTCTATTCATCATTTTGGGGATTTCAGCAAATTAGTACACTGACTGGGAATTTAATCCCTAGCTATTTTGTTCCCGAAATCCTTTTTACTAAGGCCATTCTTGCGTCAGGACTGTTGCTGTTTGCTCTTCTCATTGGAAACATACAGAATATTCTTCAGGCTCTTGGACGCAGGAAGCTAGAGATGTCACTTAGGCGACGTGATGTTGAGCAATGGATGAGCCACCGGCGCTTAGGAGATGATCTAAGAAGGAGAGTGCGACAGGCTGAACGATATAACTGGGCTGCAACAAGGGGGGTGAATGAAGAAATGCTCCTGGAGAATTTGCCAGAAGACCTCCAAAGGGAAATTAGACGTCATCTCTTCACATTTATTAAGAAAGTTCGAATTTTTGCCTTACTGGATGAGCCTATCTTGGATGCCATATGTGAGAGGCTAAGGCAGAAAACATATATCAAAGGAAGCAAAATTTTGTATGATTGTGGTTTGGTAGAGAAGATGGTTTTTATTGTGCGTGGAAAATTGGAGAGCGTTGGCGAAGATGGAATCAGTGCTCCCCTTTATGAAGGGAGTGTCTGTGGTGAAGAACTTCTGACATGGTGTCTTGAGCATTCCTTAGCAAGCAAAGGTTGCAGAAAAGCAAGGATTCCAAGGCAAAAGCTGGTTAGTAACAGAAGAGTAATATGCTTAACAAATGTGGAGGCATTTTCCCTTAGAGCAGCAGACCTTGAAGAAGTTACAGGCCTATTTGCAAGATTCTTTAGGAATCCCCGTGTTCAAGGAGCCATAAGGTATGAATCACCTTATTGGAGATGCTTTGCAGCAACAAGCATTCAGGTTGCATGGAAATACAGAATGAAATGTCTCCGTCGTGCTAAAACTACATAA 2295 0.4026 MANFERDEVAILSDCHPQASVEVLDSGFPRHVSRTRSVSISIPATLTEPYERDTNLVGYTGPLRIQRITQMSGPLHVTNRPGNLFRQNKVVPQSQAEESKTENFSSCCGIMGENDLQNYACKNEHLVRSGPLGMCIDPYCTTCPTYFKAIQKSSSNASGIFNHEFRNTLYDDAKNWARRLFTFLIPHVPRVINPHNKLVQQWKQFFVICCLVAIFVDPLFFFLLSVQKNNKCIVIDWAFTKLLVALRSMNDFIHFLNIVLQFRLAYVAPESRVVGAGELVDHPKKIALHYFKTSFFIDLFVVLPLPQIFILFVLPTHLGTGSTGANYANNLLRIVILVQHIPRLCRFLPMIFSPAGFVFESPWANFFINLSTFVLSGHVVGSWWYLFSLQRVNQCLREACDTTHITGCTKFIDCGHGITEAYQHNNSWHNWRNNTFANACFTEDGFRDGYGIFIKAVNLTAHPNLSTRYFYSSFWGFQQISTLTGNLIPSYFVPEILFTKAILASGLLLFALLIGNIQNILQALGRRKLEMSLRRRDVEQWMSHRRLGDDLRRRVRQAERYNWAATRGVNEEMLLENLPEDLQREIRRHLFTFIKKVRIFALLDEPILDAICERLRQKTYIKGSKILYDCGLVEKMVFIVRGKLESVGEDGISAPLYEGSVCGEELLTWCLEHSLASKGCRKARIPRQKLVSNRRVICLTNVEAFSLRAADLEEVTGLFARFFRNPRVQGAIRYESPYWRCFAATSIQVAWKYRMKCLRRAKTT 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9375g00004 764 ProSiteProfiles cAMP/cGMP binding motif profile. 599 667 IPR000595 -
Vium9375g00004 764 CDD CAP_ED 599 715 IPR000595 -
Vium9375g00004 764 Gene3D Helix hairpin bin 527 591 - -
Vium9375g00004 764 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 157 756 - -
Vium9375g00004 764 Pfam Ion transport protein 202 527 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vium9375g00004 764 Gene3D Jelly Rolls 597 721 IPR014710 -
Vium9375g00004 764 SUPERFAMILY cAMP-binding domain-like 527 723 IPR018490 -
Vium9375g00004 764 Gene3D - 199 524 - -
Vium9375g00004 764 SUPERFAMILY Voltage-gated potassium channels 194 522 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9375g00004 Vium-Chr9375 18309 25657 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9375g00004 5 679 Ion Channels AT3G17700 58.565 0.0 774
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9375g00004 K05391 - gmx:100795955 1246.49