Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9375g00003 ATGTCACTTAGGCGACGTGATGTTGAGCAATGGATGAGCCACCGGCGCTTAGGAGATGATCTAAGAAGGAGAGTGCGACAGGCTGAACGATATAACTGGGCTGCAACAAGGGGGGTGAATGAAGAAATGCTCCTGGAGAATTTGCCAGAAGACCTCCAAAGGGAAATTAGACGTCATCTCTTCACATTTATTAAGAAAGTTCGAATTTTTGCCTTACTGGATGAGCCTATCTTGGATGCCATATGTGAGAGGCTAAGGCAGAAAACATATATCAAAGGAAGCAAAATTTTGTATGATTGTGGTTTGGTAGAGAAGATGGTTTTTATTGTGCGTGGAAAATTGGAGAGCGTTGGCGAAGATGGAATCAGTGCTCCCCTTTATGAAGGGAGTGTCTGTGGTGAAGAACTTCTGACATGGTGTCTTGAGCATTCCTTAGCAAGCAAAGGTTGCAGAAAAGCAAGGATTCCAAGGCAAAAGCTGGTTAGTAACAGAAGAGTAATATGCTTAACAAATGTGGAGGCATTTTCCCTTAGAGCAGCAGACCTTGAAGAAGTTACAGGCCTATTTGCAAGATTCTTTAGGAATCCCCGTGTTCAAGGAGCCATAAGGTATGAATCACCTTATTGGAGATGCTTTGCAGCAACAAGCATTCAGGTTGCATGGAAATACAGAATGAAATGTCTCCGTCGTGCTAAAACTACATAA 705 0.4298 MSLRRRDVEQWMSHRRLGDDLRRRVRQAERYNWAATRGVNEEMLLENLPEDLQREIRRHLFTFIKKVRIFALLDEPILDAICERLRQKTYIKGSKILYDCGLVEKMVFIVRGKLESVGEDGISAPLYEGSVCGEELLTWCLEHSLASKGCRKARIPRQKLVSNRRVICLTNVEAFSLRAADLEEVTGLFARFFRNPRVQGAIRYESPYWRCFAATSIQVAWKYRMKCLRRAKTT 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9375g00003 234 Gene3D Jelly Rolls 67 191 IPR014710 -
Vium9375g00003 234 Gene3D Helix hairpin bin 3 61 - -
Vium9375g00003 234 ProSiteProfiles cAMP/cGMP binding motif profile. 69 137 IPR000595 -
Vium9375g00003 234 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 1 226 - -
Vium9375g00003 234 CDD CAP_ED 69 185 IPR000595 -
Vium9375g00003 234 SUPERFAMILY cAMP-binding domain-like 5 193 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9375g00003 Vium-Chr9375 12767 15947 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9375g00003 1 149 Ion Channels AT3G17700 75.168 1.78e-76 242
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9375g00003 K05391 - vum:124848378 469.929