Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium936g00023 ATGGTCCCAATTGGTCATGCTTCCGATGACAAGCAGAAAAAACGAGACTCAGGAGAAATCGTTTTGGAGGAGAAAAGTGTGGTAACTCTAAGAGAACTCTTGGAAGAATGCATTAGTGACACTGAGAAATCTCATCAACCACCTGAATTAGCTGGTGGTAATCCAAGCTCAACGACCGAGTTTCACCGGAGGAAGTTACTCAGACCATGCAGAATGAGATCAATTGAGCGCCTACCATCTTTTCCTCCAAGTTGTTTGTCAAAACTAACAAAGCCTAAAAGCAAAGGCATTGGGAAAAACACTATTCGATGTAATCCACACAGTTCCAGAACTTTGGTGAATTTCAGTCTTTCTGACCTGAGAAATGCAACCAACAATTTTAGCAATGAGAATATAATTGGAAGAGGTGGTTATGCTTATGTTTACAAGGGCAGCCTGCAAGATGGGCAACTAATAGCAGTTAAGCAACTGAGTAGAGGGACTCCAGAAGACAGGATATCAGTTCTTCTATCTGAGCTAGGAATTCTTTCTCATGTTGAACACCCCAATACTGCCATGCTTATTGGGTTTGGAGTTGAAGGGGGAATGTACCTTGTTTTTCGATTATCTCCTATGGGAAATTTAGGATCTCTTCTTCATGGTCCTAATAAAAATACCTTGGATTGGAGCAAAAGGTATAAAATTATTTTGGGGATAGCAGATGGCCTCCTCTATCTTCATGAGATTTGTCAAAGGCGAATCATTCATAGAGATCTTAAATCAGATAACATTCTGCTCACTGAGAATTTTGAGCCGCAGATTTGTGATTTTGGGCTCTCAAAATGGCTACCAGAACCCTGCAGTCATCATATTGTACCAAAATTTGAAGGCACAGTTGGGTATTTTGCTCCTGAGTATGTGATGCATGGCATTGTAAACGAAAAAACTGATATTTATTCCTTTGGGGTCTTACTTTTGGAGATTATAACTGGGCGTCGTGCTTTGGATCATCTGAAAGAAAGTATTATGCTATGGGCAAAGCCTTTATTGGAAGCTAATAATATTAAGGACCTTGTTGATCCTTCTCTGGGTGATGATTATGACTGGGAACAAATGGAACGTGTAGTTTTGACTGCATCACTGTGTGTTGAGCAGTTTCCTATCTTACGCCCCAGAATGAGTCAGATTGCAATACTGCTAAGAGGTGATGACTATGTCATGGAACATACTGAGAGGAGTAACAAGATGTACAAGAATACAACTCAAGGAGCTATTTAA 1257 0.4025 MVPIGHASDDKQKKRDSGEIVLEEKSVVTLRELLEECISDTEKSHQPPELAGGNPSSTTEFHRRKLLRPCRMRSIERLPSFPPSCLSKLTKPKSKGIGKNTIRCNPHSSRTLVNFSLSDLRNATNNFSNENIIGRGGYAYVYKGSLQDGQLIAVKQLSRGTPEDRISVLLSELGILSHVEHPNTAMLIGFGVEGGMYLVFRLSPMGNLGSLLHGPNKNTLDWSKRYKIILGIADGLLYLHEICQRRIIHRDLKSDNILLTENFEPQICDFGLSKWLPEPCSHHIVPKFEGTVGYFAPEYVMHGIVNEKTDIYSFGVLLLEIITGRRALDHLKESIMLWAKPLLEANNIKDLVDPSLGDDYDWEQMERVVLTASLCVEQFPILRPRMSQIAILLRGDDYVMEHTERSNKMYKNTTQGAI 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium936g00023 418 MobiDBLite consensus disorder prediction 1 20 - -
Vium936g00023 418 ProSitePatterns Serine/Threonine protein kinases active-site signature. 247 259 IPR008271 GO:0004672|GO:0006468
Vium936g00023 418 Gene3D Transferase(Phosphotransferase) domain 1 204 415 - -
Vium936g00023 418 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 204 407 - -
Vium936g00023 418 ProSitePatterns Protein kinases ATP-binding region signature. 133 155 IPR017441 GO:0005524
Vium936g00023 418 Pfam Protein tyrosine and serine/threonine kinase 130 335 IPR001245 GO:0004672|GO:0006468
Vium936g00023 418 Gene3D Phosphorylase Kinase; domain 1 90 201 - -
Vium936g00023 418 MobiDBLite consensus disorder prediction 40 62 - -
Vium936g00023 418 SUPERFAMILY Protein kinase-like (PK-like) 105 392 IPR011009 -
Vium936g00023 418 SMART serkin_6 127 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium936g00023 418 ProSiteProfiles Protein kinase domain profile. 127 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium936g00023 418 PANTHER OS08G0249100 PROTEIN 14 409 IPR046958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium936g00023 Vium-Chr936 159603 164278 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium936g00023 112 399 Receptor kinase-like Gene Family AT1G53420 42.712 2.24e-67 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Vium936g00023 PK_Tyr_Ser-Thr 1.8e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium936g00023 - - gmx:113001177 603.979