Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium936g00010 ATGGAGTGCAACAAGGATGAAGCTGTGAGGGCTAAGCAGATTGCTGAAAATAAGATGCAAGCTGGTGACTATGAAGGGGGGCTGAAATTTGCTTCAAAAGCCCAAAGGCTGTTTCCTGATATTCAAAACATTGTTCAGATCCTTGCAGTTTGTGAGGTCCACTGTGCTGCTCAGAAGAAACACTCTGGGTCTGACGTGGACTGGTATGGAATTCTCCAGACTCAACAATCTGCCGATGAAGCAACCATTAAGAAACAGTATAGAAAGCTTGCACTGCTACTTCATCCTGATAAAAATAAATCTGCTGGTGCAGAGGCTGCTTTCAAGTTGGTTGGTGAAGCTAACAGAGTGTTAAGCGATCCATCGAAGCGTACTCTGTATGACTCAAAATTTGGAGTTTCAGTGGGAAATACAGAAGCTAAGGTCGCCCCTTGTCACCCAAATGGAAATGCAAGGAATTATCAGAACATTTTTAATTCACAGCCCCAGGCTTGGAATTCATATCATCAGTTTGAAAGTTCGACATTTTGGACATGTTGTTGTCATTGTAATATTAGATATCAATACTACAAAACTATTTTAAATCAGACCATACGCTGTCAACACTGTTCTAAATCCTTTACAGCTCATGCTATGGGGAACCACAATGTGGCACCAACATATTGGCCACCTTTCAATAATCACCAAGGGTCTGCAAAACATGCATCGTCTAAAGAAGCATCAAAAGGCAATGGTGGAAAATCTCGTGGTAGAGAAGAAGAGGGTGTGTCCATGTCAAAATGTGGTGCAGGAGTTGGTGCCTATTCTAAAGTTGCAAATGGCAGAAATGGCCATGTGGCTGCAGGAGTGACAAAGGCTGATGTTAAAGTGTCCAAAGCCAAGGAATCGCAAGCCTCAACGAAAGTTGGTTGTAAAAGAGCAAGGCAGTCAGCATCATATGACAATAACAAAGCTGGAGATGGTAAAGGCATGAAAGACACCAAGGATCAAGAAAATACGGTTGATCCTTCTGGGAAAACTTCAAGGAAAAAACAGCATGTTCTGTACCCAAAAACTGATAAAGCTGGTGATTTTGGAAGTTCATCCAAAAGTACACAAAATCATGAATCATCTACCACCCCTAGAGTAGAGAAAAAAGAAGTGTCAGCAACTGGTGATGGTGATCAGAATGGGGAGACAAGAAATAAAGCAGGTGCACTACATGAAGAAACAATTTTAAGGAATAGAGCCAAAGTTGAGCAGACTAATGTGCAAGGAAAGGAGGTATTGAACTCAGATTTCAATGATAGAAAGTCTAAAGCTGTCTATTGTTCTCCATCGAAGTCAAATTTATCTCCCAATTCAGAGATTGTCTGTCCTGATACAGATTTCAGTGATTTTGAGAGAGATAAGGCAGAGGATTGTTTTGCTGTTAATCAATTATGGGCTATTTTTGACAATAATGATGGTATGCCACGATTCTATGCTCTTGTGAAGAAAGTCTACTCCCCTTTCACGTTGCGGATTACTTGGCTAGAAGCTGACTCAGATGACCAAGGTGAGATTGACTGGCATAAAGCCGGTTTGCCTATTGCTTGTGGTAAGTTCAGACTTGGTCATTCTCAGATTACTTCAGATCGTTTTATGTTCTCTCATCAGATGCATTGCATAAAAGGAAGTAGGACTACATATCTGATATACCCAAAGAAGGGAGAAACTTGGGCAATTTTCAGACACTGGGATCTTGGATGGAGTTCAAATCCAGAAAAGCATTTTGAGTATGAATTTGAATATGTGGAAGTTCTATCAGATTTTGACGAAAATTTAGGCATTGAAGTTGCTTATCTTGGGAAACTGACAGGGTTTGTTAGTCTCTTTCAACATTCTGCATTGGATGGTATTAGCTTATTTTGTGTATCACCTCGTGAGATGTACAAGTTCTCTCATCGGATTCCTTCTTACAAGATGACAGGCGCTGAAAGGAAAGGTGTTCCAAGTGGATCTTTTGAACTTGATCCTGCTGGTCTGCCTACTTGTCTTTTTGAAGTTGGTGATACTGGTGTTGCGAAAGTGGATGGAGTCAATTGTTCCCACCAGGAGTATGCAAACTCTAAAGTTGAACAGGCAACTTCTAATGATAGTATTCACAATTCAAAGTTGCAAGAGAGTATTGACACCGAAAGAACAGCACAAATTCTCAGAAGGTCTCCAAGGTCGAGCCAAAAAAGTATGGACAATGGCCAAGCAAGCACTGTTCAATTCACGGTCAGAAAGGATGACATAAACATTGACCACAGGGACTACAGTCCCCCAGAAGGAAGCGCTGCTTCGTCCCATACTAATGAGAGGAAGGTCAAGAAACCTCAGAAACACAAGAAAAATAGTTATGATGGAGAGACATTGAATAAGTTGCATAAAGATCTAAGCAAGAAAAATGTTCTAGGAGATGCATCTGAAAGGACATGTAAGTTGACTGTTAATCATTCAAAAAACAGCAATAATGTGAAGAGTAGCAACACTCCTCAGTTTGGAGAATCATGTTACGACTTTAAGAAGGAAAAATCTGAAAAGACGTTTCAGTGTGGACAGATATGGGCAATATATTGTGATAGGGATTATATGCCCAATACTTACGCTCAAATTAAGAAGATTGAATTCACTCCTAATTTTAGATTGCAGGTTTCCATGCTTGAACCGTGCTCACCGTCAGGTGACCTTAAAAGAACAATATCTTGTGGCACCTTCGAAGTTAAAAAAGGCAAATTACAGATTCTCTCTCCCTCTGCATTCTCTCATCAGTTAAAAGTTGAACCTTTGGTAAATAATAGATATGAAATTTACCCTAGAAAAGGTGAGGTTTGGGCTCTTTACGGGGACCAGAACTATGAGCTGACTTCTTCAAAGCAGGGCAAAGGTAAATGTGATATAGTAGAAGTATTAGCAGATAGTGACAAGACTATACAGGTTGTTGTTCTGACGCCACATAGCAACTCCAAGACAATTTTCAGAGCTCCTAGAATTCAGAGATCTAAAACTGGTGTAATTGAAATATTAAGAGAAGAGGTTGGCAGATTTTCACATCAGATTCCTGCTTTTCAGCACTGGGACAATGTGATTCTCAGAGGGTGTTGGGAGCTTGATCCTTCTTCAGTTCCTGGTTCTTTCGTACCAATAAACTGA 3159 0.4036 MECNKDEAVRAKQIAENKMQAGDYEGGLKFASKAQRLFPDIQNIVQILAVCEVHCAAQKKHSGSDVDWYGILQTQQSADEATIKKQYRKLALLLHPDKNKSAGAEAAFKLVGEANRVLSDPSKRTLYDSKFGVSVGNTEAKVAPCHPNGNARNYQNIFNSQPQAWNSYHQFESSTFWTCCCHCNIRYQYYKTILNQTIRCQHCSKSFTAHAMGNHNVAPTYWPPFNNHQGSAKHASSKEASKGNGGKSRGREEEGVSMSKCGAGVGAYSKVANGRNGHVAAGVTKADVKVSKAKESQASTKVGCKRARQSASYDNNKAGDGKGMKDTKDQENTVDPSGKTSRKKQHVLYPKTDKAGDFGSSSKSTQNHESSTTPRVEKKEVSATGDGDQNGETRNKAGALHEETILRNRAKVEQTNVQGKEVLNSDFNDRKSKAVYCSPSKSNLSPNSEIVCPDTDFSDFERDKAEDCFAVNQLWAIFDNNDGMPRFYALVKKVYSPFTLRITWLEADSDDQGEIDWHKAGLPIACGKFRLGHSQITSDRFMFSHQMHCIKGSRTTYLIYPKKGETWAIFRHWDLGWSSNPEKHFEYEFEYVEVLSDFDENLGIEVAYLGKLTGFVSLFQHSALDGISLFCVSPREMYKFSHRIPSYKMTGAERKGVPSGSFELDPAGLPTCLFEVGDTGVAKVDGVNCSHQEYANSKVEQATSNDSIHNSKLQESIDTERTAQILRRSPRSSQKSMDNGQASTVQFTVRKDDINIDHRDYSPPEGSAASSHTNERKVKKPQKHKKNSYDGETLNKLHKDLSKKNVLGDASERTCKLTVNHSKNSNNVKSSNTPQFGESCYDFKKEKSEKTFQCGQIWAIYCDRDYMPNTYAQIKKIEFTPNFRLQVSMLEPCSPSGDLKRTISCGTFEVKKGKLQILSPSAFSHQLKVEPLVNNRYEIYPRKGEVWALYGDQNYELTSSKQGKGKCDIVEVLADSDKTIQVVVLTPHSNSKTIFRAPRIQRSKTGVIEILREEVGRFSHQIPAFQHWDNVILRGCWELDPSSVPGSFVPIN 1052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium936g00010 1052 MobiDBLite consensus disorder prediction 700 802 - -
Vium936g00010 1052 Pfam DnaJ domain 67 128 IPR001623 -
Vium936g00010 1052 MobiDBLite consensus disorder prediction 222 243 - -
Vium936g00010 1052 Gene3D DnaJ domain 52 143 IPR036869 -
Vium936g00010 1052 SMART dnaj_3 66 123 IPR001623 -
Vium936g00010 1052 MobiDBLite consensus disorder prediction 726 750 - -
Vium936g00010 1052 MobiDBLite consensus disorder prediction 395 409 - -
Vium936g00010 1052 SUPERFAMILY Chaperone J-domain 64 130 IPR036869 -
Vium936g00010 1052 PANTHER DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN-RELATED 1 1045 - -
Vium936g00010 1052 CDD DnaJ 67 120 IPR001623 -
Vium936g00010 1052 PRINTS DnaJ domain signature 103 123 IPR001623 -
Vium936g00010 1052 PRINTS DnaJ domain signature 87 102 IPR001623 -
Vium936g00010 1052 PRINTS DnaJ domain signature 69 87 IPR001623 -
Vium936g00010 1052 MobiDBLite consensus disorder prediction 357 371 - -
Vium936g00010 1052 Pfam Domain of unknown function (DUF3444) 836 1027 IPR024593 -
Vium936g00010 1052 Pfam Domain of unknown function (DUF3444) 448 653 IPR024593 -
Vium936g00010 1052 MobiDBLite consensus disorder prediction 222 257 - -
Vium936g00010 1052 ProSiteProfiles dnaJ domain profile. 67 131 IPR001623 -
Vium936g00010 1052 MobiDBLite consensus disorder prediction 319 351 - -
Vium936g00010 1052 MobiDBLite consensus disorder prediction 286 412 - -
Vium936g00010 1052 MobiDBLite consensus disorder prediction 295 316 - -
Vium936g00010 1052 MobiDBLite consensus disorder prediction 785 802 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium936g00010 Vium-Chr936 46907 54563 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium936g00010 4 212 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 34.112 1.00e-27 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium936g00010 - - var:108342824 2120.12