Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9363g00006 ATGGGGCAGAAGCAGAGACTCGTGATCATTGGCGTTTCTACCTTCTTGCTGGTGGCTATGGTGGTAGCCGTTACGGTTAGCGTGAGCCTGAACAACAAGGGAGCAAAGGATGCTGAAAATGAAGAAACAAAATCACACGTAGCTTCCTCCATGAAAGCGGTGAAAACCCTTTGCGCACCCACGGAGTACCAGAAAGAATGCGAGGACAATCTCAATGCAAACGCCGGCAACATCACTGATCCCAGGGAACTCATAAAAATCGCCTTCAACGTCACCATCTCCCGAATCAGCGACGGGCTAGGGCAAACCAAGCTCATGCACGACGTCGAGAGCGATCCCAGAACCAAGGAGGCCCTCGACACGTGCAAACAACTCATGAACCTCTCCATCGAAGAGTTCAATCGCTCCCTCCAGAGGTTCAGCAAGTTCGACCTCAACAACATCGATCGCATCCTCACCAGTCTCAAGGTGTGGCTCAGCGGCGCCGTCACGTACCAGGAATCGTGCCTTGACGCGTTCGATAACACCACCACCGACGCTGGCAAGAAGATGCAGGAGCTCTTGCAAACCGCCATGCACATGACCAGCAACGGCCTCGCTATCATCACCGAGCTGTCGAAGACTTTCTCCGAGATGCACCTCCCCAAGTCTGGCCGCCGCCTCTTGACGACCGCCGACGATTTGCCCGTTCTTGGCAACGAAACCGACGACGACTTTGACGTTCCCGATTGGGTTGAGAACCGCGGTGGCCTTCGCAGACTCTTGCATATGACTGGACGCAAACAAATGGCCCATGTGGTGGTTGCCAAGGATGGCAGTGGAAATTTCACCACCATCAACGAAGCCTTGAAGCACGTGCCCATGAAAAACCTAAGGCCTTTTATCATCTACATCAAGGAGGGCGTTTACGACGAGTACGTGGAAGTTTCCAGGAACATGACCCATGTCGTCATGATCGGTGATGGTGGTAGGAAGTCGAGGATCACAGGCAGCAAAAACTTCATCGATGGTGTGGGAACCTACAAAACCGCCAGTGCTGCCATTATTGGAGATTTCTTCGTCGCCATAGGTATGGGATTTGAAAACACAGCCGGTGCTGAAAAACATCAAGCGGTGGCATTGAGGGTTCAATCTGACAGGTCCATCTTCTACAAGTGCCGAATGGATGGGTACCAAGACACTCTTTACGCCCACGCCATGCGTCAATTCTACCGCGACTGCACCATTTCTGGTACCATAGACTTTGTGTTCGGCGACGCAGTGGCTGTGCTCCAGAACTGCACATTCGTTGTCCGAAAGCCGTTGGCAAACCAGCAATGCATTGTGACCGCACAAGGTAGAAAGGAGAGCAACCAGCCATCGGGTCTGGTGATCCATGGAGGATCGATTGTGTCAGACCCCCTGTATTACCCAGTCAGGTTCGACAACAAGGCGTACTTGGCTCGTCCATGGAAGAATTTCTCAAGGACCATCTTCATGGATTCGTTCATCGATGACTTGATCACACCCGACGGCTACATGCCATGGCAGACATTGGAAGGTTTAAGCGGAATGGACACTTGTTTCTACGCTGAGATAAACAACCATGGCCCTGGTGCAGACATATCGAAGCGCGTGAAATGGGAAGGAATCAAGGCCCTGACGAAGGACGTAGCAACAGGATTCTTGCCATCACCGTTCTTCCATGGAGATGACTGGATTAGGGTCACAAGGGTTCCTTACGACTCTGGCCTGCCCTCCGCCACTCACTGA 1752 0.5245 MGQKQRLVIIGVSTFLLVAMVVAVTVSVSLNNKGAKDAENEETKSHVASSMKAVKTLCAPTEYQKECEDNLNANAGNITDPRELIKIAFNVTISRISDGLGQTKLMHDVESDPRTKEALDTCKQLMNLSIEEFNRSLQRFSKFDLNNIDRILTSLKVWLSGAVTYQESCLDAFDNTTTDAGKKMQELLQTAMHMTSNGLAIITELSKTFSEMHLPKSGRRLLTTADDLPVLGNETDDDFDVPDWVENRGGLRRLLHMTGRKQMAHVVVAKDGSGNFTTINEALKHVPMKNLRPFIIYIKEGVYDEYVEVSRNMTHVVMIGDGGRKSRITGSKNFIDGVGTYKTASAAIIGDFFVAIGMGFENTAGAEKHQAVALRVQSDRSIFYKCRMDGYQDTLYAHAMRQFYRDCTISGTIDFVFGDAVAVLQNCTFVVRKPLANQQCIVTAQGRKESNQPSGLVIHGGSIVSDPLYYPVRFDNKAYLARPWKNFSRTIFMDSFIDDLITPDGYMPWQTLEGLSGMDTCFYAEINNHGPGADISKRVKWEGIKALTKDVATGFLPSPFFHGDDWIRVTRVPYDSGLPSATH 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9363g00006 583 PANTHER PECTINESTERASE 14 568 - -
Vium9363g00006 583 FunFam Pectinesterase 50 206 - -
Vium9363g00006 583 NCBIfam pectinesterase inhibitor domain 47 205 IPR006501 GO:0004857
Vium9363g00006 583 FunFam Pectinesterase 259 578 - -
Vium9363g00006 583 Gene3D - 260 578 IPR012334 -
Vium9363g00006 583 SMART PMEI_2 49 201 IPR006501 GO:0004857
Vium9363g00006 583 CDD PMEI-like_3 56 207 - -
Vium9363g00006 583 ProSitePatterns Pectinesterase signature 2. 409 418 IPR033131 -
Vium9363g00006 583 SUPERFAMILY Pectin lyase-like 265 576 IPR011050 -
Vium9363g00006 583 Pfam Plant invertase/pectin methylesterase inhibitor 53 201 IPR006501 GO:0004857
Vium9363g00006 583 ProSitePatterns Pectinesterase signature 1. 290 309 IPR018040 -
Vium9363g00006 583 Pfam Pectinesterase 265 564 IPR000070 GO:0030599|GO:0042545
Vium9363g00006 583 Gene3D Invertase/pectin methylesterase inhibitor family protein 48 207 IPR035513 -
Vium9363g00006 583 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 52 206 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9363g00006 Vium-Chr9363 33277 35532 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9363g00006 3 578 Carbohydrate Esterase AT3G05610 48.187 0.0 589
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9363g00006 K01051 - gmx:100801686 956.051