Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9363g00005 ATGTCACATTATAACCTCCAAAAGATGATGACCATGCTTAGTTTCCTTTTCATTCTCGTGCTTTTACCCTCCTTTGAGGCTCTCTCATATGAAGGCATTCCCTCAGAAATCCAAACCCAAGACATGCAAGCATTGATTGCACAAGCATGCATGGACATTGAAAACCAAAACTCCTGCCTCACAAACATCCACAACGAGCTCACTAAAATAGGCCCACCAAGCCCCACATCGGTGATGAGTGCAGCACTCAAGGCCACACTCAACGAAGCAATGGTGGCCATTGACAACATGACAAAGATCACCACATTCTCCGTCAGCTACCGCGAGCAACAAGCCATAGAAGACTGCAAGGAGCTCTTGGATTTCTCGGTTTCTGAGCTGGCATGGTCCTTGGGAGAGATGAGGAGGATTCGCGCAGGAGATACCAACGTGCAATACGAGGGAAACCTTGAAGCCTGGCTTAGTGCTGCACTGAGCAACCAAGACACGTGCCTTGAAGGCTTTGAAGGCACAGACAGACGCCTCGAGAGCTACATCAGTGGAAGCTTGACACAAGTCACACAACTCATCAGCAATGTTTTGTCCCTCTACACTCAGTTGCATACCTTACCATTTAAGCCTCCAAGAAACACTACTACTGCGGAATCTGATGGAACCTCGGAGTTTCCTGAATGGATGACTGAGGGTGATCAAGAGTTGCTCAGAGCCAAGCCACATGGTGTTCCTGCGGATGCAGTTGTTGCTTTGGATGGGAGTGGTCACTATCGCTCCATCGCCGAAGCTGTTAATGCAGCTCCCAGTCACAGTCAAAGAAGGTATATTATTTACGTGAAAAAAGGACTTTACAAGGAGAATATTGACATGAAGAAGAAGATGACCAACATCATGCTCGTCGGAGATGGTATAGGCCAAACCATTATCACCAGCAACCGGAATTTCATGCAGGGATGGACCACCTTTCGAACGGCCACGCTTGCTGTGTCTGGGAAGGGTTTCATTGCAAGGGACATGTCGTTCCGGAACACAGCAGGGCCGGTGAACCATCAAGCGGTGGCGCTGCGTGTGGATTCAGACCAATCAGCCTTCTACAGGTGCAGTGTGGAAGGGCACCAAGACACGCTCTACGCCCACTCCCTGCGACAGTTCTACCGTGAGTGCGAAATATATGGCACCATAGACTTCATTTTCGGCAACGGTGCTGCAGTACTGCAAAACTGCAAAATATACACCAGGGTTCCACTTCCCTTGCAGAAGGTTACCATCACGGCCCAAGGCAGGAAAAGCCCACACCAGAGCACGGGCTTCACCATCCAGGACAGCTATATTCTCGCCACCCAGCCCACCTACTTGGGCCGGCCCTGGAAACAATACTCTAGGACGGTTTACATTAACACTTACATGAGTGGGCTTGTCCAGCCCCGGGGCTGGCTTGAGTGGCTCGGAAACTTTGCCCTCAACACTTTGTGGTACGGTGAGTACAGAAATTATGGGCCCGGTGCATCTCTGGTGGGCCGGGTCAGATGGCCCGGTTATCATGTAATCAAAGATGCCTCCACCGCTAGTTTTTTCACCGTTCAGAGGTTCATTAATGGTGACACGTGGCTGCCAAGGACAGGTGTCAAGTTCACAGCAGGTCTCACCAATTGA 1647 0.5033 MSHYNLQKMMTMLSFLFILVLLPSFEALSYEGIPSEIQTQDMQALIAQACMDIENQNSCLTNIHNELTKIGPPSPTSVMSAALKATLNEAMVAIDNMTKITTFSVSYREQQAIEDCKELLDFSVSELAWSLGEMRRIRAGDTNVQYEGNLEAWLSAALSNQDTCLEGFEGTDRRLESYISGSLTQVTQLISNVLSLYTQLHTLPFKPPRNTTTAESDGTSEFPEWMTEGDQELLRAKPHGVPADAVVALDGSGHYRSIAEAVNAAPSHSQRRYIIYVKKGLYKENIDMKKKMTNIMLVGDGIGQTIITSNRNFMQGWTTFRTATLAVSGKGFIARDMSFRNTAGPVNHQAVALRVDSDQSAFYRCSVEGHQDTLYAHSLRQFYRECEIYGTIDFIFGNGAAVLQNCKIYTRVPLPLQKVTITAQGRKSPHQSTGFTIQDSYILATQPTYLGRPWKQYSRTVYINTYMSGLVQPRGWLEWLGNFALNTLWYGEYRNYGPGASLVGRVRWPGYHVIKDASTASFFTVQRFINGDTWLPRTGVKFTAGLTN 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9363g00005 548 SUPERFAMILY Pectin lyase-like 241 545 IPR011050 -
Vium9363g00005 548 Gene3D - 240 546 IPR012334 -
Vium9363g00005 548 PANTHER PECTINESTERASE 20 536 - -
Vium9363g00005 548 Pfam Plant invertase/pectin methylesterase inhibitor 45 196 IPR006501 GO:0004857
Vium9363g00005 548 CDD PMEI-like_4 73 200 - -
Vium9363g00005 548 NCBIfam pectinesterase inhibitor domain 10 201 IPR006501 GO:0004857
Vium9363g00005 548 ProSitePatterns Pectinesterase signature 2. 388 397 IPR033131 -
Vium9363g00005 548 FunFam Pectinesterase 43 202 - -
Vium9363g00005 548 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 45 200 IPR035513 -
Vium9363g00005 548 SMART PMEI_2 41 196 IPR006501 GO:0004857
Vium9363g00005 548 FunFam Pectinesterase 239 546 - -
Vium9363g00005 548 Pfam Pectinesterase 244 532 IPR000070 GO:0030599|GO:0042545
Vium9363g00005 548 Gene3D Invertase/pectin methylesterase inhibitor family protein 42 201 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9363g00005 Vium-Chr9363 23984 26028 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9363g00005 17 548 Carbohydrate Esterase AT3G05620 64.154 0.0 707
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9363g00005 K01051 - gmx:100810565 1012.29