Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9362g00003 ATGGGTGATCATCGCTGCTTTCTCTGCTCTCATTGTTGCTGCTGTTTCGGAGATTTCTATTCCGCATTTCTTGACGGCGTCCATTTTCTCGGCACAAAGTGCGGACCTTGCTGTTTTTCATCGGAATGTACGCTTGTTGGTTCTGTTGTGCGTGACTTCGGGAATATGCAGGTCAAAATCTTTGGGATACGAGGTTGCTGTTTTGGCATTGCAAACATGATTCTGGTTAAGAGGATGAGAGAAACGCTATACTCTTCTCTTCTACTGCAGGACATATCGTTTTTTGACAATGAAACGGTAGGTGATTTGACAAGTAGGCTTGGGGCTGATTGTCAACAAGTGTCAAGAGTTATTGGAAATGATCTTAACTTGATATTGCGCAACTTTCTTCAGGGTGGAGGTTCATTAATCTACTTGTTGATTTTATCTTGGCCACTTGGTTTATGTACATTGGTGATTTGCTCCATATTAGCAGCAGTCATGTTACGCTATGGAAGTTACCAGAAAAAGGCAGCAAGGTTGATCCAAGAAGTCACTGCTTCGGCAAATGATGTAGCTCAAGAGACATTCTCTCTTATTAGAACTGTACGAGTTTATGGAACAGAAGAAGAAGAATATGGAAGGTATAATTGGTGGCTAGGGAAATTAGCTGACATCAGCTTGCGACAAAGTGCTGCTTATGGAGTTTGGAATTTTAACTTTAATATCCTTTATCATTCAACTCAGGTTATTGCTGTGCTATTTGGAGGAATGTCTATTCTAGGGGGTCATATCACAGCTGAGAAACTTACCAAGTTTATTCTATACAGTGAATGGTTAATCTACTCTACCTGGTGGGTGGGAGACAATATATCCAATTTGATGCAATCAGTTGGGGCTAGTGAAAAAGTATTCCATTTAATGGATCTCTCCCCTAGCAGCCAATTCACAGAAAAAGGTATAAAGTTGCAGAGGTTAATGGGGTGTATTGAGTTTCTAAATGTATCTTTTCACTATCCTTCGAGGCCAACGGTATCTGTAGTGCAACATGTTAGCTTTGCTGTCCATCCTGGTGAGGTGGTTGCAATAGTTGGACTTAGTGGTAGTGGAAAAAGCACATTGGTGAATCTTTTGCTCCGTCTCTATGAGCCTACGAATGGTCAGATTTTGGTAGATGACATCCCTATTCAAGACTTGGACATCATGTGGTGGAGAGAGAGAATTGGATTTGTGGGCCAGGAACCCAAACTCTTCCGGATGGATATTAGTTCAAACATTAGATATGGATGTAGAGATGTAAAGCAGGAGGATATTGAATGGGCTGCAAAGCAAGCCTATGCTCATGACTTTATCTCAGCACTTCCCAATGGTTATGGGACACTTGTTGATGATGATCTGTTAAGTGGAGGACAAAAGCAGCGAATTGCTATTGCTAGGGCCCTTCTTAGGGACCCAAAAATATTGATCCTTGATGAAGCCACCAGTGCACTTGATGCTGAAAGTGAGCATAATGTCAAGGGTGTTCTTCGGTCTGTGAGAAGTGATTCTGCAACCAGAAGTGTCATAGTCATCGCACACAGGCTTTCTACCATACAAGCAGCTGACAGGATTGTGGTGATGGATGGTGGTCAAATTGTTGAGATTGGAAGTCACAGGGATCTTCTCTTAAGAGATGGTTTATATGCACGGTTAACTAGGAAACAGGCTGATGCCATGGCATGA 1701 0.4215 MGDHRCFLCSHCCCCFGDFYSAFLDGVHFLGTKCGPCCFSSECTLVGSVVRDFGNMQVKIFGIRGCCFGIANMILVKRMRETLYSSLLLQDISFFDNETVGDLTSRLGADCQQVSRVIGNDLNLILRNFLQGGGSLIYLLILSWPLGLCTLVICSILAAVMLRYGSYQKKAARLIQEVTASANDVAQETFSLIRTVRVYGTEEEEYGRYNWWLGKLADISLRQSAAYGVWNFNFNILYHSTQVIAVLFGGMSILGGHITAEKLTKFILYSEWLIYSTWWVGDNISNLMQSVGASEKVFHLMDLSPSSQFTEKGIKLQRLMGCIEFLNVSFHYPSRPTVSVVQHVSFAVHPGEVVAIVGLSGSGKSTLVNLLLRLYEPTNGQILVDDIPIQDLDIMWWRERIGFVGQEPKLFRMDISSNIRYGCRDVKQEDIEWAAKQAYAHDFISALPNGYGTLVDDDLLSGGQKQRIAIARALLRDPKILILDEATSALDAESEHNVKGVLRSVRSDSATRSVIVIAHRLSTIQAADRIVVMDGGQIVEIGSHRDLLLRDGLYARLTRKQADAMA 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9362g00003 566 Gene3D ABC transporter type 1, transmembrane domain 66 320 IPR036640 GO:0005524|GO:0016020
Vium9362g00003 566 CDD ABC_6TM_TAP 62 297 - -
Vium9362g00003 566 Gene3D - 321 562 IPR027417 -
Vium9362g00003 566 SUPERFAMILY ABC transporter transmembrane region 62 305 IPR036640 GO:0005524|GO:0016020
Vium9362g00003 566 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 314 561 IPR027417 -
Vium9362g00003 566 ProSitePatterns ABC transporters family signature. 460 474 IPR017871 GO:0005524|GO:0016887
Vium9362g00003 566 PANTHER ABC TRANSPORTER B FAMILY 58 558 IPR039421 -
Vium9362g00003 566 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 323 560 IPR003439 GO:0005524
Vium9362g00003 566 FunFam Multidrug ABC transporter ATP-binding protein 315 565 - -
Vium9362g00003 566 Pfam ABC transporter transmembrane region 60 274 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium9362g00003 566 SMART AAA_5 350 537 IPR003593 GO:0016887
Vium9362g00003 566 Pfam ABC transporter 342 488 IPR003439 GO:0005524
Vium9362g00003 566 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 63 289 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9362g00003 Vium-Chr9362 5427 19479 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9362g00003 78 564 Calmodulin-binding Proteins AT2G36910 33.800 4.27e-74 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9362g00003 - - vra:106777591 974.156