Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9362g00002 ATGGTCCACAGCAATATACACACTCCTCTCAAGCTCCCACCGTTATCCCAACCCCATCTTCCTCTTCCCACGCGCTTCACCACCATGCCTCTTCTACTCGCTCGCACACCACCATCTTCACTTCCTCCAATCCTTCACCACCACTACAACAACAACAACCACCACCTTCTAATCGCACCTTCTCAGAAGCGCTTCCCTCTCATTGCAGGGCCAATTCTTCTTCCCCGGCGCATTCTAGCATCATCGCCTCTCAAGTGCGCCTCCATCAACGGAGTCCCCATTCTTAACAATCCCGAAGCTTCCACAGAACAAGTCCACGCCGGCGAGTTACTTCAGAGGATTCGCAAATGGCTCGACTTTTTACCGTTGATACTTCCCGGCGGGCGGTGGTGGGACTTCTCTGACGACGTTGACGTTCAGCTGGTGGCGCAGCCGGTGACCGTGTGGCGCGCGCTAGGCAAAATGTGGGAGCTTGTCGCGCGTGACAGATGGGTGATCATCGCTGCTTTCTCTGCTCTCATTGTTGCTGCTGTTTCGGAGATTTCTATTCCGCATTTCTTGACGGCGTCCATTTTCTCGGCACAAAGTGCGGACCTTGCTGTTTTTCATCGGAATGTACGCTTGTTGGTTCTGTTGTGCGTGACTTCGGGAATATGCAGTGGGATACGAGGTTGCTGTTTTGGCATTGCAAACATGATTCTGGTTAAGAGGATGAGAGAAACGCTATACTCTTCTCTTCTACTGCAGGACATATCGTTTTTTGACAATGAAACGGTAGGTGATTTGACAAGTAGGCTTGGGGCTGATTGTCAACAAGTGTCAAGAGTTATTGGAAATGATCTTAACTTGATATTGCGCAACTTTCTTCAGGGTGGAGGTTCATTAATCTACTTGTTGATTTTATCTTGGCCACTTGGTTTATGTACATTGGTGATTTGCTCCATATTAGCAGCAGTCATGTTACGCTATGGAAGTTACCAGAAAAAGGCAGCAAGGTTGATCCAAGAAGTCACTGCTTCGGCAAATGATGTAGCTCAAGAGACATTCTCTCTTATTAGAACTGTACGAGTTTATGGAACAGAAGAAGAAGAATATGGAAGGTATAATTGGTGGCTAGGGAAATTAGCTGACATCAGCTTGCGACAAAGTGCTGCTTATGGAGTTTGGAATTTTAACTTTAATATCCTTTATCATTCAACTCAGGTTATTGCTGTGCTATTTGGAGGAATGTCTATTCTAGGGGGTCATATCACAGCTGAGAAACTTACCAAGTTTATTCTATACAGTGAATGGTTAATCTACTCTACCTGGTGGGTGGGAGACAATATATCCAATTTGATGCAATCAGTTGGGGCTAGTGAAAAAGTATTCCATTTAATGGATCTCTCCCCTAGCAGCCAATTCACAGAAAAAGGTATAAAGTTGCAGAGGTTAATGGGGTGTATTGAGTTTCTAAATGTATCTTTTCACTATCCTTCGAGGCCAACGGTATCTGTAGTGCAACATGTTAGCTTTGCTGTCCATCCTGGTGAGGTGGTTGCAATAGTTGGACTTAGTGGTAGTGGAAAAAGCACATTGGTGAATCTTTTGCTCCGTCTCTATGAGCCTACGAATGGTCAGATTTTGGTAGATGACATCCCTATTCAAGACTTGGACATCATGTGGTGGAGAGAGAGAATTGGATTTGTGGGCCAGGAACCCAAACTCTTCCGGATGGATATTAGTTCAAACATTAGATATGGATGTAGAGATGTAAAGCAGGAGGATATTGAATGGGCTGCAAAGCAAGCCTATGCTCATGACTTTATCTCAGCACTTCCCAATGGTTATGGGACACTTGTTGATGATGATCTGTTAAGTGGAGGACAAAAGCAGCGAATTGCTATTGCTAGGGCCCTTCTTAGGGACCCAAAAATATTGATCCTTGATGAAGCCACCAGTGCACTTGATGCTGAAAGTGAGCATAATGTCAAGGGTGTTCTTCGGTCTGTGAGAAGTGATTCTGCAACCAGAAGTGTCATAGTCATCGCACACAGGCTTTCTACCATACAAGCAGCTGACAGGATTGTGGTGATGGATGGTGGTCAAATTGTTGAGATTGGAAGTCACAGGGATCTTCTCTTAAGAGATGGTTTATATGCACGGTTAACTAGGAAACAGGCTGATGCCATGGCATGA 2178 0.4522 MVHSNIHTPLKLPPLSQPHLPLPTRFTTMPLLLARTPPSSLPPILHHHYNNNNHHLLIAPSQKRFPLIAGPILLPRRILASSPLKCASINGVPILNNPEASTEQVHAGELLQRIRKWLDFLPLILPGGRWWDFSDDVDVQLVAQPVTVWRALGKMWELVARDRWVIIAAFSALIVAAVSEISIPHFLTASIFSAQSADLAVFHRNVRLLVLLCVTSGICSGIRGCCFGIANMILVKRMRETLYSSLLLQDISFFDNETVGDLTSRLGADCQQVSRVIGNDLNLILRNFLQGGGSLIYLLILSWPLGLCTLVICSILAAVMLRYGSYQKKAARLIQEVTASANDVAQETFSLIRTVRVYGTEEEEYGRYNWWLGKLADISLRQSAAYGVWNFNFNILYHSTQVIAVLFGGMSILGGHITAEKLTKFILYSEWLIYSTWWVGDNISNLMQSVGASEKVFHLMDLSPSSQFTEKGIKLQRLMGCIEFLNVSFHYPSRPTVSVVQHVSFAVHPGEVVAIVGLSGSGKSTLVNLLLRLYEPTNGQILVDDIPIQDLDIMWWRERIGFVGQEPKLFRMDISSNIRYGCRDVKQEDIEWAAKQAYAHDFISALPNGYGTLVDDDLLSGGQKQRIAIARALLRDPKILILDEATSALDAESEHNVKGVLRSVRSDSATRSVIVIAHRLSTIQAADRIVVMDGGQIVEIGSHRDLLLRDGLYARLTRKQADAMA 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9362g00002 725 SUPERFAMILY ABC transporter transmembrane region 154 464 IPR036640 GO:0005524|GO:0016020
Vium9362g00002 725 FunFam Multidrug ABC transporter ATP-binding protein 474 724 - -
Vium9362g00002 725 Pfam ABC transporter 501 647 IPR003439 GO:0005524
Vium9362g00002 725 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 482 719 IPR003439 GO:0005524
Vium9362g00002 725 ProSitePatterns ABC transporters family signature. 619 633 IPR017871 GO:0005524|GO:0016887
Vium9362g00002 725 SMART AAA_5 509 696 IPR003593 GO:0016887
Vium9362g00002 725 Gene3D - 472 724 IPR027417 -
Vium9362g00002 725 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 473 720 IPR027417 -
Vium9362g00002 725 PANTHER ABC TRANSPORTER B FAMILY 161 717 IPR039421 -
Vium9362g00002 725 CDD ABC_6TM_TAP 169 456 - -
Vium9362g00002 725 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 167 448 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium9362g00002 725 Pfam ABC transporter transmembrane region 167 433 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium9362g00002 725 FunFam ABC transporter B family member 26, chloroplastic 148 467 - -
Vium9362g00002 725 Gene3D ABC transporter type 1, transmembrane domain 149 470 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9362g00002 Vium-Chr9362 5427 19900 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9362g00002 237 723 Calmodulin-binding Proteins AT2G36910 33.800 2.07e-72 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9362g00002 - - vra:106777591 1368.6