Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9362g00001 ATGGGAATTAATTTTGATGCTTACGAGGACATTCCCGTTGAGACGAGCGGTGAAAACGTGCCCCCACCTGTGAATACTTTTGCGGAGATTGAATTGGGCGATGCTCTTAATCAAAACATTAGACGCTGCAAATATGTTAAACCAACGCCGGTCCAGCGGCATGCCATACCCATATCCCTTGGCGGACGGGATTTGATGGCTTGTGCTCAGACTGGTTCCGGAAAGACTGCAGCATTCTGTTTCCCTATTATCAGTGGCATTATGAGAGGTCAAGGGCAGGCCCCCCTGCGGCCCCCTCGCGGTGCCCGTACAGTCTATCCACTTGCCCTTGTTCTCTCGCCGACTAGGGAGTTATCTGTGCAAATACTTGAAGAGGCTAGGAAGTTTTCATACCAGAGTGGGCGCGTCGTTCTGAAGAAAAAGCGTTTGGGTGGGGTTGGAGAGTGA 447 0.5123 MGINFDAYEDIPVETSGENVPPPVNTFAEIELGDALNQNIRRCKYVKPTPVQRHAIPISLGGRDLMACAQTGSGKTAAFCFPIISGIMRGQGQAPLRPPRGARTVYPLALVLSPTRELSVQILEEARKFSYQSGRVVLKKKRLGGVGE 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9362g00001 148 Gene3D - 1 143 IPR027417 -
Vium9362g00001 148 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 25 53 IPR014014 GO:0003724
Vium9362g00001 148 Pfam DEAD/DEAH box helicase 49 136 IPR011545 GO:0003676|GO:0005524
Vium9362g00001 148 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 7 136 IPR027417 -
Vium9362g00001 148 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 56 148 IPR014001 -
Vium9362g00001 148 PANTHER RNA HELICASE 21 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9362g00001 Vium-Chr9362 1819 2639 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9362g00001 14 122 Eukaryotic Initiation Factors Gene Family AT1G72730 35.780 2.12e-08 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9362g00001 K11594 - vum:124831718 293.508