Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9346g00005 ATGAGAAATATTTTATTTGATGGACGATTCCAGATATTGAGGGATCTCATACCTCATAGTGATCAGAAGAGGGACACGGCATCATTTTTGTTAGAGGTGATCGAGTATGTTCAGTACCTGCAGGAGAAGGTACAAAAGTATGAAGGTTCATATCCAGGTTGGGGTCAAGAGCCCTCGAAGTTGATGCCATGGAGAAATAGTCATTGGCGTGTCCAAAGCTTCGCTGGTCAACCTTCGGCTGTAAAGAATGGTTTGGGTACTGTATCACCTTTTCCTGGAAAGTTTGATGAAAGCAGTGTTAGTATCTCTCCAACTATGCTTAGTGGCACACAGAACACGATAGATCCTGATCAGAGCAGGGATATTGTCAACAAGACAGCAGAGAGGCAACCTGATTTAGTGAGCAAGGGAATACCTCTTCCCTTGCCTATGCATTCAAACATGTCCGTTCCTGTCAGAAGTGATGGTGTACTTGCACATCCTCTTCAGGGAACTGTCTCTGATGCACAATCAACTGAATGCCCAACAACTAGTGAACCTCAGAATCAGCAGGATGAACTCACGGTTGAAGGAGGGACAATTAGCATCTCAAGTGTATACTCCCAAGGGTTGTTGAACAATCTAACTCAGGCATTACAAAGTGCCGGTTTAGATCTGTCACAAGCTAGTATCTCAGTTCAGATTAATCTTGGGAAACGAGCAAACAGAGGATTGAGCTGTGGGACCTCTTCTCCTAAGAATCATGACAACCCTCTTTCAAATAATCAAACAATTGCACATTTTAGAGATTCAGGAAGTGGAGAAGACTCGGATCAAACGCAAAAACGAATGAAAACATACAAGTGA 846 0.4314 MRNILFDGRFQILRDLIPHSDQKRDTASFLLEVIEYVQYLQEKVQKYEGSYPGWGQEPSKLMPWRNSHWRVQSFAGQPSAVKNGLGTVSPFPGKFDESSVSISPTMLSGTQNTIDPDQSRDIVNKTAERQPDLVSKGIPLPLPMHSNMSVPVRSDGVLAHPLQGTVSDAQSTECPTTSEPQNQQDELTVEGGTISISSVYSQGLLNNLTQALQSAGLDLSQASISVQINLGKRANRGLSCGTSSPKNHDNPLSNNQTIAHFRDSGSGEDSDQTQKRMKTYK 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9346g00005 281 MobiDBLite consensus disorder prediction 166 186 - -
Vium9346g00005 281 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 8 61 IPR036638 GO:0046983
Vium9346g00005 281 MobiDBLite consensus disorder prediction 239 263 - -
Vium9346g00005 281 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 9 279 IPR044295 GO:0003700|GO:0006351|GO:0046983
Vium9346g00005 281 CDD bHLH_AtBIM_like 9 65 - -
Vium9346g00005 281 MobiDBLite consensus disorder prediction 239 281 - -
Vium9346g00005 281 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 40 IPR011598 GO:0046983
Vium9346g00005 281 MobiDBLite consensus disorder prediction 264 281 - -
Vium9346g00005 281 Pfam Helix-loop-helix DNA-binding domain 9 41 IPR011598 GO:0046983
Vium9346g00005 281 Gene3D - 3 57 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9346g00005 Vium-Chr9346 54028 58473 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9346g00005 2 279 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G69010 53.597 1.08e-90 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium9346g00005 HLH 0.00014 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9346g00005 - - gmx:100816055 517.309