Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9346g00004 ATGAGAGCAGGGAAGGGGAATCAGGAAGAGGATGAGTACGACGAAGAAGACTTTGGTTCTTCCAAGAAACAAGGCACTTCTTCTGCCCCCAACACCAACAAAGATGGAAAAGCCATTGATAAGGCCAGTGCGATAAGATCGAAACATTCTGTGACCGAGCAGCGGAGAAGGAGCAAGATAAACGAGAGATTCCAGATATTGAGGGATCTCATACCTCATAGTGATCAGAAGAGGGACACGGCATCATTTTTGTTAGAGGTGATCGAGTATGTTCAGTACCTGCAGGAGAAGGTACAAAAGTATGAAGGTTCATATCCAGGTTGGGGTCAAGAGCCCTCGAAGTTGATGCCATGGAGAAATAGTCATTGGCGTGTCCAAAGCTTCGCTGGTCAACCTTCGGCTGTAAAGAATGGTTTGGGTACTGTATCACCTTTTCCTGGAAAGTTTGATGAAAGCAGTGTTAGTATCTCTCCAACTATGCTTAGTGGCACACAGAACACGATAGATCCTGATCAGAGCAGGGATATTGTCAACAAGACAGCAGAGAGGCAACCTGATTTAGTGAGCAAGGGAATACCTCTTCCCTTGCCTATGCATTCAAACATGTCCGTTCCTGTCAGAAGTGATGGTGTACTTGCACATCCTCTTCAGGGAACTGTCTCTGATGCACAATCAACTGAATGCCCAACAACTAGTGAACCTCAGAATCAGCAGGATGAACTCACGGTTGAAGGAGGGACAATTAGCATCTCAAGTGTATACTCCCAAGGGTTGTTGAACAATCTAACTCAGGCATTACAAAGTGCCGGTTTAGATCTGTCACAAGCTAGTATCTCAGTTCAGATTAATCTTGGGAAACGAGCAAACAGAGGATTGAGCTGTGGGACCTCTTCTCCTAAGAATCATGACAACCCTCTTTCAAATAATCAAACAATTGCACATTTTAGAGATTCAGGAAGTGGAGAAGACTCGGATCAAACGCAAAAACGAATGAAAACATACAAGTGA 1008 0.4444 MRAGKGNQEEDEYDEEDFGSSKKQGTSSAPNTNKDGKAIDKASAIRSKHSVTEQRRRSKINERFQILRDLIPHSDQKRDTASFLLEVIEYVQYLQEKVQKYEGSYPGWGQEPSKLMPWRNSHWRVQSFAGQPSAVKNGLGTVSPFPGKFDESSVSISPTMLSGTQNTIDPDQSRDIVNKTAERQPDLVSKGIPLPLPMHSNMSVPVRSDGVLAHPLQGTVSDAQSTECPTTSEPQNQQDELTVEGGTISISSVYSQGLLNNLTQALQSAGLDLSQASISVQINLGKRANRGLSCGTSSPKNHDNPLSNNQTIAHFRDSGSGEDSDQTQKRMKTYK 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9346g00004 335 FunFam BHLH domain class transcription factor 42 114 - -
Vium9346g00004 335 CDD bHLH_AtBIM_like 43 119 - -
Vium9346g00004 335 MobiDBLite consensus disorder prediction 220 240 - -
Vium9346g00004 335 Pfam Helix-loop-helix DNA-binding domain 46 95 IPR011598 GO:0046983
Vium9346g00004 335 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 44 94 IPR011598 GO:0046983
Vium9346g00004 335 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 42 115 IPR036638 GO:0046983
Vium9346g00004 335 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 5 333 IPR044295 GO:0003700|GO:0006351|GO:0046983
Vium9346g00004 335 MobiDBLite consensus disorder prediction 293 317 - -
Vium9346g00004 335 MobiDBLite consensus disorder prediction 318 335 - -
Vium9346g00004 335 Gene3D - 42 111 IPR036638 GO:0046983
Vium9346g00004 335 SMART finulus 50 100 IPR011598 GO:0046983
Vium9346g00004 335 MobiDBLite consensus disorder prediction 39 57 - -
Vium9346g00004 335 MobiDBLite consensus disorder prediction 293 335 - -
Vium9346g00004 335 MobiDBLite consensus disorder prediction 1 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9346g00004 Vium-Chr9346 53004 58473 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9346g00004 1 333 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G69010 57.612 1.56e-121 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium9346g00004 HLH 1.8e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9346g00004 - - gmx:100816055 629.017