Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9346g00003 ATGAGAGCAGGGAAGGGGAATCAGGAAGAGGATGAGTACGACGAAGAAGACTTTGGTTCTTCCAAGAAACAAGGCACTTCTTCTGCCCCCAACACCAACAAAGCAGATGGAAAAGCCATTGATAAGGCCAGTGCGATAAGATCGAAACATTCTGTGACCGAGCAGCGGAGAAGGAGCAAGATAAACGAGAGATTCCAGATATTGAGGGATCTCATACCTCATAGTGATCAGAAGAGGGACACGGCATCATTTTTGTTAGAGGTGATCGAGTATGTTCAGTACCTGCAGGAGAAGGTACAAAAGTATGAAGGTTCATATCCAGGTTGGGGTCAAGAGCCCTCGAAGTTGATGCCATGGAGAAATAGTCATTGGCGTGTCCAAAGCTTCGCTGGTCAACCTTCGGCTGTAAAGAATGGTTTGGGTACTGTATCACCTTTTCCTGGAAAGTTTGATGAAAGCAGTGTTAGTATCTCTCCAACTATGCTTAGTGGCACACAGAACACGATAGATCCTGATCAGAGCAGGGATATTGTCAACAAGACAGCAGAGAGGCAACCTGATTTAGTGAGCAAGGGAATACCTCTTCCCTTGCCTATGCATTCAAACATGTCCGTTCCTGTCAGAAGTGATGGTGTACTTGCACATCCTCTTCAGGGAACTGTCTCTGATGCACAATCAACTGAATGCCCAACAACTAGTGAACCTCAGAATCAGCAGGATGAACTCACGGTTGAAGGAGGGACAATTAGCATCTCAAGTGTATACTCCCAAGGGTTGTTGAACAATCTAACTCAGGCATTACAAAGTGCCGGTTTAGATCTGTCACAAGCTAGTATCTCAGTTCAGATTAATCTTGGGAAACGAGCAAACAGAGGATTGAGCTGTGGGACCTCTTCTCCTAAGAATCATGACAACCCTCTTTCAAATAATCAAACAATTGCACATTTTAGAGATTCAGGAAGTGGAGAAGACTCGGATCAAACGCAAAAACGAATGAAAACATACAAGTGA 1011 0.4451 MRAGKGNQEEDEYDEEDFGSSKKQGTSSAPNTNKADGKAIDKASAIRSKHSVTEQRRRSKINERFQILRDLIPHSDQKRDTASFLLEVIEYVQYLQEKVQKYEGSYPGWGQEPSKLMPWRNSHWRVQSFAGQPSAVKNGLGTVSPFPGKFDESSVSISPTMLSGTQNTIDPDQSRDIVNKTAERQPDLVSKGIPLPLPMHSNMSVPVRSDGVLAHPLQGTVSDAQSTECPTTSEPQNQQDELTVEGGTISISSVYSQGLLNNLTQALQSAGLDLSQASISVQINLGKRANRGLSCGTSSPKNHDNPLSNNQTIAHFRDSGSGEDSDQTQKRMKTYK 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9346g00003 336 Pfam Helix-loop-helix DNA-binding domain 47 96 IPR011598 GO:0046983
Vium9346g00003 336 MobiDBLite consensus disorder prediction 1 59 - -
Vium9346g00003 336 MobiDBLite consensus disorder prediction 294 318 - -
Vium9346g00003 336 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 43 116 IPR036638 GO:0046983
Vium9346g00003 336 SMART finulus 51 101 IPR011598 GO:0046983
Vium9346g00003 336 FunFam BHLH domain class transcription factor 43 115 - -
Vium9346g00003 336 MobiDBLite consensus disorder prediction 294 336 - -
Vium9346g00003 336 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 45 95 IPR011598 GO:0046983
Vium9346g00003 336 Gene3D - 43 112 IPR036638 GO:0046983
Vium9346g00003 336 MobiDBLite consensus disorder prediction 319 336 - -
Vium9346g00003 336 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 5 334 IPR044295 GO:0003700|GO:0006351|GO:0046983
Vium9346g00003 336 MobiDBLite consensus disorder prediction 40 59 - -
Vium9346g00003 336 CDD bHLH_AtBIM_like 44 120 - -
Vium9346g00003 336 MobiDBLite consensus disorder prediction 221 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9346g00003 Vium-Chr9346 53004 58473 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9346g00003 1 334 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G69010 56.587 3.28e-120 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium9346g00003 HLH 1.8e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9346g00003 - - gmx:100816055 635.18