Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9344g00004 ATGCTTGTGGTTGAGTTTTTGAGGGAATTGCCAATGTCAATGCCGAGGCAAGCCTTGAGCAACCAAAACCACAACCAAATGTCGAGGCAAGCTTTCATCACAAACCATCACCATCACCTTCTTCGCCATCTTCTTCTCTTTGCACTTCTTCTTCCTCTTTCATTTGCTTCAAATCATGAAGTTACTGCATTGGTTTCCTGGATGCATAGCTCTTCCAAAACTCCTTCGGCCTTTTCTACTTGGAACCCTTTGGACTCCAATCCTTGCAGTTGGTCTTTCATCAAATGCTCTTCAGCAAACCTTGTCACCGAGATAACCATTCAAAATGTTGAGCTGGCCCTTCCCTTCCCTTCGAAAATCTCATCCTTTTCTTTCCTTCAAATATTAGTCATTTCTGGGGCTAACCTCACAGGGACTATCTCACCTGACATTGGAAACTGTTCTGAGCTTAGAGTCCTTGACCTTAGCTCCAATGGTCTTGTGGGTGGCATTCCTTCTAGTGTTGGGAGGCTCAAAAACCTCCAAAACTTGAGCTTGAACTCCAACCATCTCACAGGGTCAATCCCAAGTGAGCTTGGTGATTGTGTCAATCTCAGGACCCTTGATATTTTTGATAACAGTCTTAGTGGGGATCTTCCTGTGGAGCTAGGGAAGTTGTCAAATCTGGAGGTTATAAGAGCTGGAGGGAACAGTGGCATTGTGGGGAAGATTCCAGATGAGCTAGGAGATTGCAGAAATTTGACAGTGTTGGGTCTTGCCGAGACAAAAATTTCTGGTTCATTGCCTGCTTCAATAGGCAAGCTAAGTATGCTTCAGACCTTGTCTATTTATAGTACTATGCTCTCTGGTGAGATTCCTCCTGAAATAGGGAACTGTTCAGAGCTTGTCAACTTATTTTTTTATGAGAATGACCTCTCTGGTTCCCTACCAAGAGAGATTGGTATGCTTCAGAAGCTGGAAAAGATACTGCTGTGGCAAAACAATTTTGTTGGGGACATTCCTGAGGAAATTGGTAACTGCAGAAACTTGAAGATTCTTGATGTCTCTTTGAATTCTCTCTCAGGTGGAATACCCCAAAGTCTGGGGAAACTCTCAAATCTTGAAGAACTTATGTTGAGTAACAATAACATCTCTGGTTCAATACCACCAGCTCTGTCCAATCTCACAAACCTCATACAGTTGCAGCTGGATACAAATCAGCTGTCAGGTTCAATTCCACCTGGGATTGGAAGCTTGACAAAGCTAACAGTCTTTTTTGCTTGGCAGAACAAACTTGGAAGTGGCATTCCATCATCGTTGGGAGGCTGTAGAAGCCTTGAGGCTTTGGATTTGTCATACAATGCACTCACTGATAGCTTACCCCCAGGCCTGTTTAAACTTCAAAATTTAACAAAGCTTCTGCTAATATCTAATGATATTTCTGGCCCTATTCCTCCTGAGATTGGGAACTGCACTTCACTCATTCGCCTCCGGCTTGTAGGCAACAGAATCAGTGGGGAGATACCAAGAGAAATCGGCTCTCTTAAGAGCCTTTATTTCCTTGATCTGTCTGAAAATCAGCTGACTGGGTCAGTACCATTTGAGATTGGAAACTGTAAAGAACTGCAAATGCTGAATCTAAGCAACAACTCCCTTTCTGGAGCTTTGCCTAGTTATTTGTCTTCTCTCAAAAGGCTAGAGGTCTTGGATGTTTCTATGAATAACTTCTCCGGTGAGGTTCCAATGAGTATTGGCCAACTCACTTCACTTCTTAGACTCATCCTAAGTAGAAACTCTTTCTCTGGGCCAATTCCCTCCTCAATTGGGCAATGTTCAGGTCTTCAGCTGCTAGACCTTAGCAGCAACAACTTTTCAGGGAGCATTCCACCAGAACTGCTTCAAATTGAAGCACTTGATATTTCTCTAAATCTGAGTCACAATGCATTATCTGGAGTGATCCCACCAGAGATTTCTTCTCTGAAAAAGCTGTCAGTTCTAGACCTTTCACACAACAATCTTGAAGGTGACTTGACGGCCTTTTCAGGGCTCGAAAATCTTGTTTCTCTAAACATTTCCTACAACAAAATCACTGGTTATCTTCCAGACACCAAGTTATTCCATCAACTATCAGCAACAGATTTGGCTGGAAACCAAGGTTTGTGTCCTAATGGTCACGATTCTTGTTTTGTTAGCAGTGAGGCTATGACAAAAATGCTGAATGGTACTAATTCTAAAAGGTCAGAGATAATCAAACTGGCTATTGGGCTGCTCAGTGCCTTGATTGTTGCAATGACAGTCTTTGGAGTTGTTACTGTCTTTCGAGCAAGGAAAATCATTCAAGCAGACAATGATTCTGAGATGGGAGGAGATTCATGGCCTTGGCAGTTCACCCCATTCCAAAAGGTAAACTTCTCTGTGGAGCAAGTCTTAAAGTGTTTGGTGGAATCCAATGTAATTGGAAAGGGGTGCTCAGGGATTGTTTATCGTGCCGAAATGGAAAATGGGGATATCATTGCCGTGAAAAGACTATGGCCAACAGCAATAGCTGCAAAATGTGATGATCAAAGCGACAAGTTAGCAGTTAATGGTGGAGGGGTACGTGATTCCTTTTCAGCTGAGGTAAAAACTCTCGGTTCAATTCGCCACAAGAACATTGTAAGGTTCTTGGGTTGCTGTTGGAACAGAAAGACAAGGTTGCTTATGTATGATTACATGCCAAATGGGAGTCTAGGAAGTCTGCTTCATGAACGAAGTGGAAACTGCTTGGAATGGGACATAAGGTTTAGGATAATACTAGGAGCAGCACAAGGTGTGGCTTATTTGCACCATGATTGTGCTCCTCCTATTGTTCATAGGGACATCAAGGCCAACAACATTCTCATAGGCCCTGAATTTGAACCATACATAGCTGATTTTGGGCTTGCAAAACTTGTTGAAGATGGAGATTTTGCTCGATCTTCTAGCACACTAGCTGGTTCCTATGGTTACATTGCTCCTGAGTATGGGTACATGATGAAAATAACAGAGAAAAGTGATGTTTATAGCTATGGCATTGTTGTGCTAGAAGTCCTGACAGGGAAGCAACCAATTGATCCAACAATACCTGATGGACTCCACATTGTTGATTGGGTAAGACAGAAAAGAGGTGGAGTTGAAGTGGTGGATGAAAGCTTGAGAGCTCGGCCAGAATCCGAAATTGAGGAAATGTTGCAGACCTTAGGAGTGGCTTTGCTGTGTGTGAACTCAAGCCCAGATGACAGACCAACCATGAAAGATGTTGTAGCAATGATGAAGGAAATTAGGCAGGAGAGAGAGGAATGTGTTAAAGTTGACTTGCTTCTTCATGCATCTTCTGCAAATGATCAACAAGAAAGAAATATTTCAAATAGCCAACATAGCAATGAGGCTAGGCAACTAGGATTTTCTTAG 3408 0.4272 MLVVEFLRELPMSMPRQALSNQNHNQMSRQAFITNHHHHLLRHLLLFALLLPLSFASNHEVTALVSWMHSSSKTPSAFSTWNPLDSNPCSWSFIKCSSANLVTEITIQNVELALPFPSKISSFSFLQILVISGANLTGTISPDIGNCSELRVLDLSSNGLVGGIPSSVGRLKNLQNLSLNSNHLTGSIPSELGDCVNLRTLDIFDNSLSGDLPVELGKLSNLEVIRAGGNSGIVGKIPDELGDCRNLTVLGLAETKISGSLPASIGKLSMLQTLSIYSTMLSGEIPPEIGNCSELVNLFFYENDLSGSLPREIGMLQKLEKILLWQNNFVGDIPEEIGNCRNLKILDVSLNSLSGGIPQSLGKLSNLEELMLSNNNISGSIPPALSNLTNLIQLQLDTNQLSGSIPPGIGSLTKLTVFFAWQNKLGSGIPSSLGGCRSLEALDLSYNALTDSLPPGLFKLQNLTKLLLISNDISGPIPPEIGNCTSLIRLRLVGNRISGEIPREIGSLKSLYFLDLSENQLTGSVPFEIGNCKELQMLNLSNNSLSGALPSYLSSLKRLEVLDVSMNNFSGEVPMSIGQLTSLLRLILSRNSFSGPIPSSIGQCSGLQLLDLSSNNFSGSIPPELLQIEALDISLNLSHNALSGVIPPEISSLKKLSVLDLSHNNLEGDLTAFSGLENLVSLNISYNKITGYLPDTKLFHQLSATDLAGNQGLCPNGHDSCFVSSEAMTKMLNGTNSKRSEIIKLAIGLLSALIVAMTVFGVVTVFRARKIIQADNDSEMGGDSWPWQFTPFQKVNFSVEQVLKCLVESNVIGKGCSGIVYRAEMENGDIIAVKRLWPTAIAAKCDDQSDKLAVNGGGVRDSFSAEVKTLGSIRHKNIVRFLGCCWNRKTRLLMYDYMPNGSLGSLLHERSGNCLEWDIRFRIILGAAQGVAYLHHDCAPPIVHRDIKANNILIGPEFEPYIADFGLAKLVEDGDFARSSSTLAGSYGYIAPEYGYMMKITEKSDVYSYGIVVLEVLTGKQPIDPTIPDGLHIVDWVRQKRGGVEVVDESLRARPESEIEEMLQTLGVALLCVNSSPDDRPTMKDVVAMMKEIRQEREECVKVDLLLHASSANDQQERNISNSQHSNEARQLGFS 1135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9344g00004 1135 ProSitePatterns Protein kinases ATP-binding region signature. 812 844 IPR017441 GO:0005524
Vium9344g00004 1135 ProSiteProfiles Protein kinase domain profile. 806 1093 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9344g00004 1135 FunFam Predicted protein 214 311 - -
Vium9344g00004 1135 Pfam Leucine Rich repeat 436 451 IPR001611 GO:0005515
Vium9344g00004 1135 ProSiteProfiles Leucine-rich repeat profile. 655 677 IPR001611 GO:0005515
Vium9344g00004 1135 PRINTS Leucine-rich repeat signature 653 666 - -
Vium9344g00004 1135 PRINTS Leucine-rich repeat signature 511 524 - -
Vium9344g00004 1135 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 898 1108 - -
Vium9344g00004 1135 SUPERFAMILY RNI-like 231 522 - -
Vium9344g00004 1135 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g34110 57 213 - -
Vium9344g00004 1135 Gene3D Ribonuclease Inhibitor 59 166 IPR032675 -
Vium9344g00004 1135 Pfam Leucine rich repeat 634 689 IPR001611 GO:0005515
Vium9344g00004 1135 Pfam Leucine rich repeat 149 208 IPR001611 GO:0005515
Vium9344g00004 1135 Pfam Leucine rich repeat 341 401 IPR001611 GO:0005515
Vium9344g00004 1135 SMART serkin_6 806 1090 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9344g00004 1135 ProSitePatterns Serine/Threonine protein kinases active-site signature. 942 954 IPR008271 GO:0004672|GO:0006468
Vium9344g00004 1135 Gene3D Ribonuclease Inhibitor 357 451 IPR032675 -
Vium9344g00004 1135 SUPERFAMILY L domain-like 80 286 - -
Vium9344g00004 1135 ProSiteProfiles Leucine-rich repeat profile. 366 389 IPR001611 GO:0005515
Vium9344g00004 1135 SMART LRR_sd22_2 147 179 - -
Vium9344g00004 1135 SMART LRR_sd22_2 364 390 - -
Vium9344g00004 1135 SMART LRR_sd22_2 412 444 - -
Vium9344g00004 1135 SMART LRR_sd22_2 195 224 - -
Vium9344g00004 1135 SMART LRR_sd22_2 653 678 - -
Vium9344g00004 1135 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 312 420 - -
Vium9344g00004 1135 Pfam Protein tyrosine and serine/threonine kinase 809 1088 IPR001245 GO:0004672|GO:0006468
Vium9344g00004 1135 SMART LRR_typ_2 436 460 IPR003591 -
Vium9344g00004 1135 SMART LRR_typ_2 171 195 IPR003591 -
Vium9344g00004 1135 SMART LRR_typ_2 364 387 IPR003591 -
Vium9344g00004 1135 SMART LRR_typ_2 388 412 IPR003591 -
Vium9344g00004 1135 SMART LRR_typ_2 653 675 IPR003591 -
Vium9344g00004 1135 SMART LRR_typ_2 580 604 IPR003591 -
Vium9344g00004 1135 SMART LRR_typ_2 508 532 IPR003591 -
Vium9344g00004 1135 SMART LRR_typ_2 316 340 IPR003591 -
Vium9344g00004 1135 SMART LRR_typ_2 676 701 IPR003591 -
Vium9344g00004 1135 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 438 725 - -
Vium9344g00004 1135 Gene3D Ribonuclease Inhibitor 167 260 IPR032675 -
Vium9344g00004 1135 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 495 1095 - -
Vium9344g00004 1135 Gene3D Phosphorylase Kinase; domain 1 790 897 - -
Vium9344g00004 1135 SUPERFAMILY Protein kinase-like (PK-like) 789 1090 IPR011009 -
Vium9344g00004 1135 Gene3D Transferase(Phosphotransferase) domain 1 898 1113 - -
Vium9344g00004 1135 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g34110 789 897 - -
Vium9344g00004 1135 Gene3D Ribonuclease Inhibitor 634 721 IPR032675 -
Vium9344g00004 1135 Gene3D Ribonuclease Inhibitor 261 356 IPR032675 -
Vium9344g00004 1135 Gene3D Ribonuclease Inhibitor 452 549 IPR032675 -
Vium9344g00004 1135 Gene3D Ribonuclease Inhibitor 550 633 IPR032675 -
Vium9344g00004 1135 Pfam Leucine rich repeat N-terminal domain 58 97 IPR013210 -
Vium9344g00004 1135 MobiDBLite consensus disorder prediction 1114 1135 - -
Vium9344g00004 1135 SUPERFAMILY L domain-like 428 742 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9344g00004 Vium-Chr9344 54832 58798 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9344g00004 55 1095 Receptor kinase-like Gene Family AT5G56040 48.723 0.0 976
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vium9344g00004 PK_Tyr_Ser-Thr 2.6e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9344g00004 - - gmx:100815339 1947.17