Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9344g00002 ATGGCGTTTCTCAAGCCTTTCTCTCTCTACATTTCCATGTCCTTGTTGTTCTTCCTCTTCTTTTGCTTCTGCAAAGCCAGTACTACCACCACAAAGTCATTGTCCCCTTCACCATCCACTTCCTCTGATGTTGAACTTCTCTTGGGAAAAATCAAAGCTTCACTGCAAGGTAACTCTGACAACCTTGTTTTGTCGTCATGGAACTCCTCTATCCCACTTTGTCAGTGGAGAGGTCTCAAGTGGGTGTTCTCCAGTGGCACTCCTCTTTCATGCACTGACTTGTCATCTCCACAATCTACCAACCTTACACTCCACAAGGACCCTTCTCTTCACTTGCTTTCTCTTCAGCTCCCATCAGCAAATCTCTCTGGTTCCCTCCCCAGAGAGCTCGGGGGGTTCCCTATGCTTCAAAGTCTTTACCTTAACATAAATTCATTGCAGGGAGCCATCCCTCTTGAGCTTGGCTACAGCTCCTCCCTCTCTGACATTGATTTGAGTGACAATATGCTAAGTGGGGTTCTTCCTCCGTCCATTTGGAACTTGTGTGACAGGCTTGTTTCCATTAGGCTCCATGGTAATTCACTATCTGGGTCTGTTTCTGAGCCTGCATTGCCCAACTCATCCTGCAAGAATTTGCAGTTGCTTGATTTAGGAGGCAATAAGTTTTCCGGGAGTTTCCCTGAGTTCCTAACAAAGTTTGGTGGGCTAAATCAGCTTGACTTGGGGAACAACTTGTTCATGGGTACAATTCCTCAAAGCCTTGCTGGGCTAAAGCTTGAAAAATTGAATCTTTCCCACAATAACTTCAGTGGGGTTTTGCCTTTCTTTGGAGAATCCAAGTTTGGTGTGGATGCTTTTGAGGGGAATAGCCCTGGTTTATGTGGACCACCTTTGGCAAGCTGTGCTAGGACCTCAGCACTGAGTTCTGGTGCAGTTGCTGGCATTGTTATTAGTCTGATGACGGGAGCTGTGGTTTTAGCCTCTTTGCTGATTGGGTATATGCAGAACAAGAAGAGGAAGGGGAGTGGAGAGAGTGAAGATGAGTTGAATGAGGAAGAGGAAGATGAAGAGAATGGTGGTAATGCTATATGTGGAGCTGGTGAAGGGAAGCTTATGTTGTTCCCTGGAGGTGAGAATTTGACATTGGATGATGTGTTAAATGCAACTGGGCAAGTGTTGGAGAAGACTTGTTATGGGACAGCTTATAAGGCTAAGCTTGCTGATGGAGGCACAATTGCTTTGAGATTGTTGCGAGAAGGTAGCTGCAAAGATAGGGCTTCATGTTTGTCAGTTATAAAGCAATTGGGAAAAATTCGCCATGAGAATTTGATTCCTTTGAGAGCTTTCTATCAGGGGAAGAGAGGGGAGAAGCTCCTTATCTATGACTATCTGCCTCTCAGAACCCTTCATGATCTTTTACATGAACCTAAAGCCGGAAAACCAGTACTGAACTGGGCCAGACGACACAAGATTGCATTAGGCATAGCGAGAGGTCTAGCCTATCTTCACACAGGACTAGAAGTTCCTATCACTCATGCAAATGTAAGGTCGAAGAATGTGCTTGTGGATGACTTCTTTGCAGCAAGGCTAACTGATTTTGGCCTGGACAAGCTGATGATTCCTTCCATAGCAGACGAAATGGTGGCGCAGGCCAAGACCGACGGCTACAAGGCTCCGGAGCTTCAAAGAATGAAGAAATGCAGCTCGAGGACGGATGTCTATGCTTTTGGCATACTACTGCTTGAAATCTTGATTGGGAAGAAGCCTGGGAAGAATGGAAGAAGTGGTGAGTATGTGGACTTGCCCTCAATGGTGAAGGTGGCAGTTTTGGAGGAGACAACAATGGAAGTGTTTGATGTGGAACTGTTGAAAGGGATAAGAAGTCCTATGGAAGATGGGTTGGTGCAGGCATTGAAGCTGGCAATGGGGTGCTGTGCACCTGTGGCATCTGTGAGGCCAAGCATGGATGAAGTTGTGAGGCAGTTGGAAGAGAATAGACCAAGGAACAGGTCTGCATTATACAGCCCTACAGAAACAAGAAGTGGCAGTGTTACACCATTTTGA 2064 0.4612 MAFLKPFSLYISMSLLFFLFFCFCKASTTTTKSLSPSPSTSSDVELLLGKIKASLQGNSDNLVLSSWNSSIPLCQWRGLKWVFSSGTPLSCTDLSSPQSTNLTLHKDPSLHLLSLQLPSANLSGSLPRELGGFPMLQSLYLNINSLQGAIPLELGYSSSLSDIDLSDNMLSGVLPPSIWNLCDRLVSIRLHGNSLSGSVSEPALPNSSCKNLQLLDLGGNKFSGSFPEFLTKFGGLNQLDLGNNLFMGTIPQSLAGLKLEKLNLSHNNFSGVLPFFGESKFGVDAFEGNSPGLCGPPLASCARTSALSSGAVAGIVISLMTGAVVLASLLIGYMQNKKRKGSGESEDELNEEEEDEENGGNAICGAGEGKLMLFPGGENLTLDDVLNATGQVLEKTCYGTAYKAKLADGGTIALRLLREGSCKDRASCLSVIKQLGKIRHENLIPLRAFYQGKRGEKLLIYDYLPLRTLHDLLHEPKAGKPVLNWARRHKIALGIARGLAYLHTGLEVPITHANVRSKNVLVDDFFAARLTDFGLDKLMIPSIADEMVAQAKTDGYKAPELQRMKKCSSRTDVYAFGILLLEILIGKKPGKNGRSGEYVDLPSMVKVAVLEETTMEVFDVELLKGIRSPMEDGLVQALKLAMGCCAPVASVRPSMDEVVRQLEENRPRNRSALYSPTETRSGSVTPF 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9344g00002 687 FunFam Leucine-rich repeat receptor-like protein kinase 209 301 - -
Vium9344g00002 687 ProSiteProfiles Protein kinase domain profile. 387 687 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9344g00002 687 Pfam Leucine rich repeat N-terminal domain 48 78 IPR013210 -
Vium9344g00002 687 SUPERFAMILY L domain-like 78 275 - -
Vium9344g00002 687 Gene3D Ribonuclease Inhibitor 185 303 IPR032675 -
Vium9344g00002 687 Gene3D Transferase(Phosphotransferase) domain 1 465 679 - -
Vium9344g00002 687 MobiDBLite consensus disorder prediction 666 687 - -
Vium9344g00002 687 Pfam Leucine rich repeat 211 269 IPR001611 GO:0005515
Vium9344g00002 687 Pfam Protein tyrosine and serine/threonine kinase 391 662 IPR001245 GO:0004672|GO:0006468
Vium9344g00002 687 Gene3D Ribonuclease Inhibitor 44 183 IPR032675 -
Vium9344g00002 687 Gene3D Phosphorylase Kinase; domain 1 376 463 - -
Vium9344g00002 687 MobiDBLite consensus disorder prediction 668 687 - -
Vium9344g00002 687 MobiDBLite consensus disorder prediction 339 361 - -
Vium9344g00002 687 SUPERFAMILY Protein kinase-like (PK-like) 391 663 IPR011009 -
Vium9344g00002 687 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 18 666 IPR046959 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9344g00002 Vium-Chr9344 10388 13582 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9344g00002 15 687 Receptor kinase-like Gene Family AT3G24660 73.887 0.0 941
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vium9344g00002 PK_Tyr_Ser-Thr 5.7e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9344g00002 - - gmx:100814814 1184.86