Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium933g00001 TGTTCAGTTCATGAAAGGGTGCTTAGGACAAGTGACGACTTTGTCTGGCCTGTTGATACTGCATTCCTTGGTCGCTTTGTTATTGATGTTGAATTTCTTGACCTGAAGGCCTTCCCTGGGAATGGTGGAGTAACCAGATCTATATGGCCATCTGATGGAAAACTGCAAACTGTTGCAGATCAGAGCGCTCTCCGATGCCTGTCTCGCATGCTTGACGAGGCTATACATGCTGACCTCACCATCATTACTGCAGACGGTACTCTGAAAGCTCACAAGGCAGTTTTATCTGCTAGTTCTACAGTGTTCCATAGTTTGTATCTTCATAATGCTGATGAAGAAGATACATATACGATCCACATGGAAGATATGTCTCAAGAATCCTGCAAGTCCCTCCTAAGTTACCTGTACGGTACTATAAACCAAGAAGATTTCTGGAACCACAGGCTTCCATTGCTTGGAGCAGCCAATAAATATGAGATTGATGATCTCAAAGACGCCTGTGAGGAAAGCCTACTAGAAGATCTTAACTCGGAAAATGTTCTGGAGAGGCTAAATGACGCTTGGCTTTACCAGTTACAGAACTTAAAGAAAGGGTGCTTCACTTTCTTATTTGATTTTGGTAAGATACATGATGTCAGAGATGAAATAAATACGTTTTTCCAACATGCTGACAGGGAGCTAATGCAGGAGATGTTTCAGGAAGTGCTTACAATTTTGAAATAG 723 0.4219 CSVHERVLRTSDDFVWPVDTAFLGRFVIDVEFLDLKAFPGNGGVTRSIWPSDGKLQTVADQSALRCLSRMLDEAIHADLTIITADGTLKAHKAVLSASSTVFHSLYLHNADEEDTYTIHMEDMSQESCKSLLSYLYGTINQEDFWNHRLPLLGAANKYEIDDLKDACEESLLEDLNSENVLERLNDAWLYQLQNLKKGCFTFLFDFGKIHDVRDEINTFFQHADRELMQEMFQEVLTILK 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium933g00001 240 PANTHER OS08G0495500 PROTEIN-RELATED 3 239 IPR044714 -
Vium933g00001 240 SUPERFAMILY POZ domain 61 173 IPR011333 -
Vium933g00001 240 ProSiteProfiles BTB domain profile. 77 136 IPR000210 GO:0005515
Vium933g00001 240 CDD BTB_POZ_ZBTB_KLHL-like 76 158 - -
Vium933g00001 240 Gene3D Potassium Channel Kv1.1; Chain A 51 204 IPR011333 -
Vium933g00001 240 SMART BTB_4 77 175 IPR000210 GO:0005515
Vium933g00001 240 Pfam BTB/POZ domain 70 173 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium933g00001 Vium-Chr933 3908 5077 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Vium933g00001 BTB 8e-21 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium933g00001 K10523 - gmx:100775687 396.356