Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9330g00013 ATGATCGGCAATGGTGTGAGGAGAGATATAGTGAAGCACAGACTTAAACTTAAGAAGGTTTCATACGCAGACCTTTACCAGCTTGCTGGTGTTGTTGCAATAGAGGTTACACAGGGTCCAATTATTGACTTTGTTCCTGGCAGAAAGGATTCAAATGAATCTCCACGAGTCCAAGCACACTTTCTAAATGGTGAAGAAGATGCAAGGAGTTTAAGGAGAAAATTTTCTCGCATGGGACTAAGTGAAGACGAAGACATAGTAGTTCTATGTGGAGGCCACGCTTTGATAAGAGCTATGCATCCAAAAGTAGCAACGAGAGAGACACCTAAGGGTGAGACGCATGAAGATCGCAGCAAGTTCGAAGAAAGAAAATGGACAAAGGAACCTTTGAAGTTTGATAACTCCTATTTTAAGGAACTACTGAGTAAGGGTGCATCCTTTTCGAGGCTTCCCATGGACTCTGCTTTAGTAGAGGATCAAAGATTTTATCACTATGTTGAACGGTATGCTAAGGATGAGGATATCTTTTTTAAAGAATATGCAATTTCACATAAGAAACTCTCAGAGCTGGGCTTCGATCCCCAAAATCTAAACATGTCCAAGGGACTATATCAGAAGCTAAATCAGCACAGGGGACTCGTAGGAATCGGTATAATATCAGTTGCGGTGGCCGGAATATTAGGTTACTTACATAAAAAGAAGAAAAATCAATTGAAAGATTGA 723 0.4053 MIGNGVRRDIVKHRLKLKKVSYADLYQLAGVVAIEVTQGPIIDFVPGRKDSNESPRVQAHFLNGEEDARSLRRKFSRMGLSEDEDIVVLCGGHALIRAMHPKVATRETPKGETHEDRSKFEERKWTKEPLKFDNSYFKELLSKGASFSRLPMDSALVEDQRFYHYVERYAKDEDIFFKEYAISHKKLSELGFDPQNLNMSKGLYQKLNQHRGLVGIGIISVAVAGILGYLHKKKKNQLKD 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9330g00013 240 Pfam Peroxidase 12 172 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium9330g00013 240 PRINTS Haem peroxidase superfamily signature 20 37 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium9330g00013 240 PRINTS Haem peroxidase superfamily signature 125 140 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium9330g00013 240 PRINTS Haem peroxidase superfamily signature 38 50 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium9330g00013 240 PRINTS Haem peroxidase superfamily signature 85 100 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium9330g00013 240 PANTHER THYLAKOID LUMENAL 29 KDA PROTEIN, CHLOROPLASTIC-RELATED 16 194 IPR044831 GO:0004601|GO:0034599
Vium9330g00013 240 Gene3D Peroxidase, domain 2 64 185 - -
Vium9330g00013 240 SUPERFAMILY Heme-dependent peroxidases 12 196 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vium9330g00013 240 Gene3D - 16 191 - -
Vium9330g00013 240 PRINTS Plant ascorbate peroxidase signature 153 177 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vium9330g00013 240 PRINTS Plant ascorbate peroxidase signature 38 50 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vium9330g00013 240 PRINTS Plant ascorbate peroxidase signature 79 100 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vium9330g00013 240 PRINTS Plant ascorbate peroxidase signature 19 37 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vium9330g00013 240 ProSiteProfiles Plant heme peroxidase family profile. 20 206 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9330g00013 Vium-Chr9330 48842 52018 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9330g00013 19 191 Peroxidase AT4G31760 30.303 3.21e-13 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9330g00013 K00434 - gmx:112998405 262.307