Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9330g00005 ATGGCGGACACTGGTGGCGACGATAATGGCGTCACCTATCTTCACGGTGACCTCGATTTGAAAATTATCGAGGCGAGGGACTTGCCGAACATGGACATCTTCTCGGAGCGTCTCCGCCGCTGCGTAACCGGCTGCGACACTATCAAATTCCACTCCGAGGACTCCGTCGACGGTGGAAGCCAGCGAACTCGGCAGCACCACCACCGGAGGATCATAACAAGTGATCCGTACGTGACGGTTTCCGTGCCGCAGGCGACGGTGGCGCGCACGCGCGTGCTGAAGAACTCGTCGGATCCTATTTGGAACGAGCGGTTCCACATCCCGCTCGCGCATCCGGTTGTGGATTTGGAGTTCCGCGTGAAGGACGACGACGTTTTCGGCGCGCAGATAATTGGAACCGTGAAGATTCCGGCGCAGCGGATTGCCACCGGCCAGTTGATTTCCGGCTGGTTCCCTGTCGTCGGGCCGTCTGGGAAGCCGGCGAAGCGGGACACGGCGCTGCACGTGGAGATGAAATTCACGTCGGTGGAGAAGAATTTGCTTTACAAGCGAGGCATTGCGGCGGATCCGGAGCAACGCGGAGTGAGGAACACGTATTTTCCGGTGAGAAAGGGGAGTTCGGTGAGGTTGTACCAGGATGCGCAATGTCCTGAAACTGGCGGAGCGAAGTTACCGGAGGTTAAGCTTGAGAATGGAGAGGTTTACAGGCACGGGAAGTGTTGGGAGGATATTTGTTATGCCATATCTGAGGCTCATCACATGGTGTATTTGGTGGGCTGGTCGATTTACCATAAGGTGAAGCTTGTTAGAGAGCCTACCAGGCCGTTGCCACGAGGTGGCGATTTGACGCTTGGCGAATTGCTGAAGTATAAGTCTGAAGAAGGGGTGAGAGTGCTGTTGCTGGTTTGGGATGATAAAACTTCGCACGACAAGGTTTTCCTCAAGACGACTGGTGTGATGCAGACTCATGATGAGGAAACCAAGAAGTTTTTTAAACATTCTTCAGTAATGTGTGTTCTGTCGCCTCGGTATGCCAGCAGCAAGATGAGCTTCTTGAAGCAACAGGTTGTTGGAACGGTCTTCACACACCACCAAAAATGTGTGATTGTGGACACACAGGCCACGGGGAATAATCGGAAGATAACTGCTTTTATTGGAGGTCTTGATCTTTGTGATGGTCGCTATGACACACCCGAGCATCGTCTGTTTCGTGATCTTGACACTGTATTTTCTGAGGATTTCCACAATCCTACATTTCCTGCTGGAACAAGGGCTCCTAGACAACCATGGCATGATTTACACTGCAGAATAGATGGACCTGCTGCATATGATGTTCTTATTAATTTTGAGCAGAGATGGAAAAAGGCAACTAAGTGGAAAGAATTTGCAATCCTTTTCAAAAAATCCTCTCAATGGCATGATGATGCTTTGATAAGAATAGAACGCATCTCATGGATATTAAGTCCTTCCGTTACCACAAAGGATAATTATACAGTTGTTCCAGAGGATGATCCTTTAGTATGGGTTTCTAGGGAAGATGATCCTGAAAACTGGCATGTTCAGATCTTCCGCTCCATTGACTCAGGGTCCCTTAAAGGATTTCCCAAACAAGTTGATGTTGCTCTGTCCCAGAATCTTATTTGTGCTAAAAGTTTGGTCATAGACAAAAGCATTCAAATGGCGTACATTGAAGCAATCAGATCTGCTCAACACTTTATTTATATTGAAAACCAGTACTTCATTGGATCATCGTATGCATGGCCTTCTTATAAAGATGCAGGGGCTGATAATCTTATCCCAATGGAGTTGGCACTGAAAATTGCTAGTAAAATCAGAGCTAAGGAAAGGTTTGCTGTCTATGTTGTTTTACCAATGTGGCCAGAAGGTGATCCAAAAACTGGGGCTATGCAAGAAATCCTCTTTTGGCAGGGCCAAACAATGCAAACAATGTATAACGTAGTTGCTAGGGAGTTAAAAGCAATGCAACTTTCTGATATAAACCCACAAGATTACCTCAATTTTTATTGCCTTGGTAATCGGGAAGACTTCAATGAAGAAATTTCAAGCACGAACGGTGCACAGGTCTCAGGAGCATATAAATATCGCAGATTTATGATTTATGTGCATGCTAAGGGAATGATCGTTGATGATGAGTATGTTATAATTGGATCTGCTAATATAAACCAAAGATCTATGGCTGGTACTAAAGATACTGAGATAGCTATGGGTGCATATCAACCCCATTACACATGGTCAGCAAAGCAAAGACATCCATATGGTCAGATTTATGGTTACAGAATGTCACTTTGGGGAGAGCATCTTGGCATGTTAGATGAAACTTTTGAGGAGCCAGAGAGTTTGGAGTGTGTGCGTAAAGTGAATGAAATTGCTGAAAACAATTGGAAATTATTCGCTTCTGAAGATTTCTCACTATTGCAAGGACATCTTCTTAAGTATCCTGTAAAGGTAGATTCTGATGGAAAGATTAGATCCCTACCCGACTGTGAGAATTTTCCCGATGCTGGCGGTAAGATATTAGGTGCTCACTCCACAGCAATCCCAGATATTCTAACAACTTAA 2580 0.4597 MADTGGDDNGVTYLHGDLDLKIIEARDLPNMDIFSERLRRCVTGCDTIKFHSEDSVDGGSQRTRQHHHRRIITSDPYVTVSVPQATVARTRVLKNSSDPIWNERFHIPLAHPVVDLEFRVKDDDVFGAQIIGTVKIPAQRIATGQLISGWFPVVGPSGKPAKRDTALHVEMKFTSVEKNLLYKRGIAADPEQRGVRNTYFPVRKGSSVRLYQDAQCPETGGAKLPEVKLENGEVYRHGKCWEDICYAISEAHHMVYLVGWSIYHKVKLVREPTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKVFLKTTGVMQTHDEETKKFFKHSSVMCVLSPRYASSKMSFLKQQVVGTVFTHHQKCVIVDTQATGNNRKITAFIGGLDLCDGRYDTPEHRLFRDLDTVFSEDFHNPTFPAGTRAPRQPWHDLHCRIDGPAAYDVLINFEQRWKKATKWKEFAILFKKSSQWHDDALIRIERISWILSPSVTTKDNYTVVPEDDPLVWVSREDDPENWHVQIFRSIDSGSLKGFPKQVDVALSQNLICAKSLVIDKSIQMAYIEAIRSAQHFIYIENQYFIGSSYAWPSYKDAGADNLIPMELALKIASKIRAKERFAVYVVLPMWPEGDPKTGAMQEILFWQGQTMQTMYNVVARELKAMQLSDINPQDYLNFYCLGNREDFNEEISSTNGAQVSGAYKYRRFMIYVHAKGMIVDDEYVIIGSANINQRSMAGTKDTEIAMGAYQPHYTWSAKQRHPYGQIYGYRMSLWGEHLGMLDETFEEPESLECVRKVNEIAENNWKLFASEDFSLLQGHLLKYPVKVDSDGKIRSLPDCENFPDAGGKILGAHSTAIPDILTT 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9330g00005 859 Pfam Phospholipase D C terminal 778 848 IPR024632 -
Vium9330g00005 859 FunFam Phospholipase D delta 231 475 - -
Vium9330g00005 859 Gene3D C2 domain 14 183 IPR035892 -
Vium9330g00005 859 SMART pld_4 704 731 IPR001736 GO:0003824
Vium9330g00005 859 SMART pld_4 359 394 IPR001736 GO:0003824
Vium9330g00005 859 CDD C2_plant_PLD 10 174 - -
Vium9330g00005 859 Pfam Phospholipase D Active site motif 359 394 IPR001736 GO:0003824
Vium9330g00005 859 Gene3D Endonuclease Chain A 227 478 - -
Vium9330g00005 859 Pfam C2 domain 16 153 IPR000008 -
Vium9330g00005 859 SUPERFAMILY Phospholipase D/nuclease 555 789 - -
Vium9330g00005 859 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 704 731 IPR001736 GO:0003824
Vium9330g00005 859 SMART C2_3c 17 150 IPR000008 -
Vium9330g00005 859 PANTHER PHOSPHOLIPASE D 10 848 IPR015679 -
Vium9330g00005 859 Pfam PLD-like domain 563 741 IPR025202 -
Vium9330g00005 859 PIRSF PLD_plant 5 859 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Vium9330g00005 859 SUPERFAMILY Phospholipase D/nuclease 199 468 - -
Vium9330g00005 859 Gene3D Endonuclease Chain A 525 755 - -
Vium9330g00005 859 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 359 394 IPR001736 GO:0003824
Vium9330g00005 859 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 14 175 IPR035892 -
Vium9330g00005 859 ProSiteProfiles C2 domain profile. 1 151 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9330g00005 Vium-Chr9330 15889 24382 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9330g00005 1 695 Phospholipase D Gene Family (Wang group) AT4G35790 71.266 0.0 1044
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9330g00005 K01115 - gmx:100814486 1584.7