Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9330g00004 ATGAATCGAAGGTCAATTCGTTGCTCTGCGATTGACAAAACAAAACCCTTAGCCTTCGTGGTCTCTTTCTTGATTCTTCTTCATCTCGGTTCAAGAGGTCTACGCTTGAAAGATCTCGTTGAAATGGCCGATTCTCCGCCAAGAAGGAATTCAAGGTCCCCTTCCCCATGGAGGGCTCAGTCAAGATCTAGGTCTAGATCTAGGCCAAGGTCTAGGTCCCGGTCAAGATCATTTGAAAAACAAAGGCCAAGGTCTCGCTCCAGAAGTCGTGGAAGATCAAGATCAAGAAGTAATGACAGGATGGAGACTAAAAATACAGGGAATACACTTTACGTCACTGGCCTATCTTCAAGGGTCACTGAGAGAGACCTGGAGGAGCATTTCTCTAAAGAGGGAAAGGTTGCTTCGTGTTTTCTTGTGGTGGAGCCCCGTACTCGCATTTCTCGAGGTTTCGCTTTTATTACAATGGATAATGTTGAGGATGCAAACCGCTGCATCAAATATCTCAATCAATCAGTTTTAGAGGGTCGCTATATCACTGTTGAGCGGTCACGAAGAAAGCGTGCAAGAACTCCTACACCTGGACACTATCTTGGTCTGAAAAGTACTCGAGACTATGGATATCGCGGTGACCGCGGAAGGTATAGAGGAGGTGGATCTGGCCGTGATGATTATGCATATCGAGGAGAGCGTGGAAGGTCTCCGAGGCGCTCACCTTATCGAGGTGGTAGAGATTATTCTCCGAGGCATTCACCGCCACCTTATGGCGGAAGAACTAGGAGGGATAGGTCCAGGTCACTTCCATACTCTCCATATGGTAGCCCAGACAGGAGGTATGCTCGTGGATCTAGGTGA 855 0.4784 MNRRSIRCSAIDKTKPLAFVVSFLILLHLGSRGLRLKDLVEMADSPPRRNSRSPSPWRAQSRSRSRSRPRSRSRSRSFEKQRPRSRSRSRGRSRSRSNDRMETKNTGNTLYVTGLSSRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFITMDNVEDANRCIKYLNQSVLEGRYITVERSRRKRARTPTPGHYLGLKSTRDYGYRGDRGRYRGGGSGRDDYAYRGERGRSPRRSPYRGGRDYSPRHSPPPYGGRTRRDRSRSLPYSPYGSPDRRYARGSR 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9330g00004 284 MobiDBLite consensus disorder prediction 184 284 - -
Vium9330g00004 284 MobiDBLite consensus disorder prediction 205 244 - -
Vium9330g00004 284 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 110 179 IPR000504 GO:0003723
Vium9330g00004 284 MobiDBLite consensus disorder prediction 44 114 - -
Vium9330g00004 284 SUPERFAMILY RNA-binding domain, RBD 58 184 IPR035979 GO:0003676
Vium9330g00004 284 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 94 269 - -
Vium9330g00004 284 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 44 192 - -
Vium9330g00004 284 CDD RRM_SF 110 182 - -
Vium9330g00004 284 Gene3D - 43 192 IPR012677 -
Vium9330g00004 284 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 108 186 IPR000504 GO:0003723
Vium9330g00004 284 MobiDBLite consensus disorder prediction 48 62 - -
Vium9330g00004 284 SMART rrm1_1 109 182 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9330g00004 Vium-Chr9330 8860 11750 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9330g00004 104 190 Eukaryotic Initiation Factors Gene Family AT1G49760 33.333 1.54e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9330g00004 K12897 - gmx:100527350 334.339