LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium9325g00002	ATGGACCCGAAGTTCACCGGAAAGCCGCCGCTGACGGTGGACCTTGAACGCATGCCGGAGCGTGGGTCCCACCACCGCCGCTCCCACTCCGACACGTCCTTCCGCTTCGCCGCGAACTTCGATGACCTGCTCCTCTTCGACGCCTCCGACCTCGACATCTCCACGCTCCCCTCGCCGCTCCCTCTGCCTTCGCCGGGGGCCTCCGGCGCGGTGCCGATAGCGGTAGATTCCGACGAGTCCGGCGGAAGGCCGAGGCCTTCAGGGGCACCCGCCGGCGGGCACCTGAGGAGTCTGTCGGTGGGCTCCGATTTCTTTGACGGGATCGGATTCGGCGGCGGCGAGGAGAGGGGCGGCGGAGGGAGGGGCGGCGGCGAGCGGAGGGTGGGGCATCACCGGCACAGCAACTCCATGGACGGGTCCTCGACGACGTCGTTTGAGGCGGACTCGGCGATGATGATAGATGGCGTGAAGAAAGCTATGGCTCCTGATAAACTAGCTGAACTCGCTCTTATTGATCCCAAAAGAGCTAAGAGGATTCTTGCTAACAGACAATCTGCTGCTAGATCAAAGGAGAGGAAGATTCGTTACACCAGTGAATTGGAGAGGAAGGTGCAGACACTTCAGACTGAAGCAACCAACCTATCTGCACAGCTTACCATGCTTCAGAGAGACACCACAGATTTAACTGCAGAGAATAAGGAACTCAAACTGCGTCTAGAGGCTTTAGAGCAAGAAGCACAGCTTAGAGAAGGTATGCATCACTTATGTTTATCATGCCGTCAAAAATGGACATGTGCTGTCCCTGTTCATCAGTTATTTCATACCAAATTGGATAAATATACNCCTACACTCTTTAAACTTTTAGCACACCATCCGTTTGATAAAAGTTCTCTAAGAAAATAA	903	0.5515	MDPKFTGKPPLTVDLERMPERGSHHRRSHSDTSFRFAANFDDLLLFDASDLDISTLPSPLPLPSPGASGAVPIAVDSDESGGRPRPSGAPAGGHLRSLSVGSDFFDGIGFGGGEERGGGGRGGGERRVGHHRHSNSMDGSSTTSFEADSAMMIDGVKKAMAPDKLAELALIDPKRAKRILANRQSAARSKERKIRYTSELERKVQTLQTEATNLSAQLTMLQRDTTDLTAENKELKLRLEALEQEAQLREGMHHLCLSCRQKWTCAVPVHQLFHTKLDKYTPTLFKLLAHHPFDKSSLRK	300

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium9325g00002	300	MobiDBLite	consensus disorder prediction	62	96	-	-
	Vium9325g00002	300	Gene3D	-	173	227	-	-
	Vium9325g00002	300	MobiDBLite	consensus disorder prediction	1	32	-	-
	Vium9325g00002	300	MobiDBLite	consensus disorder prediction	119	134	-	-
	Vium9325g00002	300	ProSiteProfiles	Basic-leucine zipper (bZIP) domain profile.	172	235	IPR004827	GO:0003700\|GO:0006355
	Vium9325g00002	300	Pfam	bZIP transcription factor	174	222	IPR004827	GO:0003700\|GO:0006355
	Vium9325g00002	300	FunFam	Transcription factor VIP1	173	226	-	-
	Vium9325g00002	300	Coils	Coil	197	252	-	-
	Vium9325g00002	300	MobiDBLite	consensus disorder prediction	14	32	-	-
	Vium9325g00002	300	SUPERFAMILY	Leucine zipper domain	174	226	IPR046347	GO:0003700\|GO:0006355
	Vium9325g00002	300	CDD	bZIP_plant_RF2	175	224	IPR044759	GO:0003700\|GO:0006355
	Vium9325g00002	300	MobiDBLite	consensus disorder prediction	109	143	-	-
	Vium9325g00002	300	PANTHER	TRANSCRIPTION FACTOR POSF21-RELATED	12	252	-	-
	Vium9325g00002	300	SMART	brlzneu	170	234	IPR004827	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium9325g00002	Vium-Chr9325	5405	9206	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium9325g00002	14	253	bZIP Transcription Factor Family	AT1G43700	52.632	4.03e-66	209

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bZIP	Vium9325g00002		bZIP_1	8.6e-08	CL0018