Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9325g00001 ATGGACCCGAAGTTCACCGGAAAGCCGCCGCTGACGGTGGACCTTGAACGCATGCCGGAGCGTGGGTCCCACCACCGCCGCTCCCACTCCGACACGTCCTTCCGCTTCGCCGCGAACTTCGATGACCTGCTCCTCTTCGACGCCTCCGACCTCGACATCTCCACGCTCCCCTCGCCGCTCCCTCTGCCTTCGCCGGGGGCCTCCGGCGCGGTGCCGATAGCGGTAGATTCCGACGAGTCCGGAGGAAGGCCGAGGCCTTCAGGGGCACCCGCCGGCGGGCACCTGAGGAGTCTGTCGGTGGGCTCCGATTTCTTTGACGGGATCGGATTCGGCGGCGGCGAGGAGAGGGGCGGCGGAGGGAGGGGCGGCGGCGAGCGGAGGGTGGGGCAACACCGGCACAGCAACTCCATGGACGGGTCCTCGACGACGTCGTTTGAGGCGGACTCGGCGATGATGATAGATGGCGTGAAGAAAGCTATGGCTCCTGATAAACTAGCTGAACTCGCTCTTATTGATCCCAAAAGAGCTAAGAGGATTCTTGCTAACAGACAATCTGCTGCTAGATCAAAGGAGAGGAAGATTCGTTACACCAGTGAATTGGAGAGGAAGGTGCAGACACTTCAGACTGAAGCAACCAACCTATCTGCACAGCTTACCATGCTTCAGGTATGTCCTTTCTTTTTTCGTGTTGATGAATAA 699 0.5994 MDPKFTGKPPLTVDLERMPERGSHHRRSHSDTSFRFAANFDDLLLFDASDLDISTLPSPLPLPSPGASGAVPIAVDSDESGGRPRPSGAPAGGHLRSLSVGSDFFDGIGFGGGEERGGGGRGGGERRVGQHRHSNSMDGSSTTSFEADSAMMIDGVKKAMAPDKLAELALIDPKRAKRILANRQSAARSKERKIRYTSELERKVQTLQTEATNLSAQLTMLQVCPFFFRVDE 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9325g00001 232 MobiDBLite consensus disorder prediction 62 96 - -
Vium9325g00001 232 MobiDBLite consensus disorder prediction 1 32 - -
Vium9325g00001 232 SMART brlzneu 170 229 IPR004827 GO:0003700|GO:0006355
Vium9325g00001 232 Pfam bZIP transcription factor 174 220 IPR004827 GO:0003700|GO:0006355
Vium9325g00001 232 FunFam probable transcription factor PosF21 173 225 - -
Vium9325g00001 232 SUPERFAMILY Leucine zipper domain 174 222 IPR046347 GO:0003700|GO:0006355
Vium9325g00001 232 MobiDBLite consensus disorder prediction 14 32 - -
Vium9325g00001 232 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 172 222 IPR004827 GO:0003700|GO:0006355
Vium9325g00001 232 MobiDBLite consensus disorder prediction 119 133 - -
Vium9325g00001 232 Gene3D - 173 224 - -
Vium9325g00001 232 MobiDBLite consensus disorder prediction 109 143 - -
Vium9325g00001 232 Coils Coil 197 217 - -
Vium9325g00001 232 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 12 222 - -
Vium9325g00001 232 CDD bZIP_plant_RF2 175 222 IPR044759 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9325g00001 Vium-Chr9325 28 1883 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9325g00001 14 222 bZIP Transcription Factor Family AT1G43700 52.340 3.75e-53 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vium9325g00001 bZIP_1 1.6e-08 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9325g00001 K20557 - gmx:778142 301.597