Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9308g00009 ATGGCTTCTTTCACTACTTCACCTTCACTGGTTGGGAAGAAGAAGGTTTTGTTCATAATGGGTGCAACCGGCTCAGGCAAGACCAAACTCTCCATCAGTTTGGCCATGCAATTTCCCTCTGAAATCATCAACTCCGACAAAATCCAAGTTTATAAGGGTCTCGACATCATCACCAACAAGGTTTCAGAGTCTCAACGTTCTGGCATTCCTCATCACCTTCTTGCCATCATTGACGACCCTGATTACGATTTCACCATTGATGACTTCTGCAACCATGTCCTTCACGCTCTTGATATCATCGTTCAAAACGGACACCTACCCATTATCGTGGGTGGCTCCAACACTTACCTCACAGCCTTGCTTGAGGACCCTGACGTTGCTTTTCGATCCAAATATGATTGTTGTTTCATCTGGGTCGATGTGTCGTTACCGGTGCTGTTTCCGTATCTGGACAAAAGGGTGGACGAAATGGTTGATGCAGGAGTTGTGGATGAGATTCGAGAAGCTTTTGTTGCTGGAGCAGATTGCAGTCGTGGGATTAGAAGAGCCATTGGAGTTCCTGAGCTTGGAGAGTTTTTCCTTCTGGAGAAGGAAATAGACGATGAGGCTCAGAAGGAGAAGATGCTACAACATGCTATTATGAAAACCAAAGAGAACACTCATAAGTTGGCTGAGAGACAACTCTCGAAGATCCGAAACATGAACCATGACTTCAAAATGTTCATAATAGATTCCACACAAGTGTTTGAGGCTGTTTTGAATGGAGTGAATTATGAGCAATTGTACGAGGAGATCGTGTTCAAACCATGCATGGAGATAGTGAAGCAATTTCTAGAAGAGACAACTGATGTGAACAAGACACATCTCGAACTGGTGAACAAGCCGTAG 888 0.4437 MASFTTSPSLVGKKKVLFIMGATGSGKTKLSISLAMQFPSEIINSDKIQVYKGLDIITNKVSESQRSGIPHHLLAIIDDPDYDFTIDDFCNHVLHALDIIVQNGHLPIIVGGSNTYLTALLEDPDVAFRSKYDCCFIWVDVSLPVLFPYLDKRVDEMVDAGVVDEIREAFVAGADCSRGIRRAIGVPELGEFFLLEKEIDDEAQKEKMLQHAIMKTKENTHKLAERQLSKIRNMNHDFKMFIIDSTQVFEAVLNGVNYEQLYEEIVFKPCMEIVKQFLEETTDVNKTHLELVNKP 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9308g00009 295 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 143 240 - -
Vium9308g00009 295 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 172 IPR027417 -
Vium9308g00009 295 FunFam Adenylate isopentenyltransferase 5, chloroplastic 143 242 - -
Vium9308g00009 295 Coils Coil 214 234 - -
Vium9308g00009 295 Gene3D - 13 278 IPR027417 -
Vium9308g00009 295 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 13 278 IPR039657 -
Vium9308g00009 295 Pfam IPP transferase 130 233 - -
Vium9308g00009 295 Pfam IPP transferase 49 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9308g00009 Vium-Chr9308 131612 132502 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9308g00009 97 286 C2H2 Transcription Factor Family AT2G27760 31.193 3.25e-16 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9308g00009 K10760 - gmx:121173984 446.047